KEGG   PATHWAY: gmu00020
Entry
gmu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Girardinichthys multiradiatus (darkedged splitfin)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gmu00020  Citrate cycle (TCA cycle)
gmu00020

Module
gmu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gmu00020]
gmu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gmu00020]
gmu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gmu00020]
gmu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gmu00020]
gmu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gmu00020]
Other DBs
GO: 0006099
Organism
Girardinichthys multiradiatus (darkedged splitfin) [GN:gmu]
Gene
124867226  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
124863465  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
124864171  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
124875461  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
124862953  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
124864340  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
124880900  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
124875329  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
124883927  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
124871950  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
124867434  isocitrate dehydrogenase [NADP], mitochondrial isoform X1 [KO:K00031] [EC:1.1.1.42]
124855638  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
124856931  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
124866152  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
124867569  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
124877860  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
124872460  ogdhb; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
124855186  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
124855605  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
124868594  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
124856719  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124871554  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124866370  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
124857328  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
124873541  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
124869276  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
124883968  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial isoform X1 [KO:K00237]
124874419  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
124859090  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) isoform X1 [KO:K00025] [EC:1.1.1.37]
124868429  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
124865748  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
124880941  pcxb; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
124856982  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
124858081  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial isoform X1 [KO:K01596] [EC:4.1.1.32]
124876695  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
124858158  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
124856571  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
124876982  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gmu00010  Glycolysis / Gluconeogenesis
gmu00053  Ascorbate and aldarate metabolism
gmu00061  Fatty acid biosynthesis
gmu00062  Fatty acid elongation
gmu00071  Fatty acid degradation
gmu00190  Oxidative phosphorylation
gmu00220  Arginine biosynthesis
gmu00250  Alanine, aspartate and glutamate metabolism
gmu00280  Valine, leucine and isoleucine degradation
gmu00350  Tyrosine metabolism
gmu00470  D-Amino acid metabolism
gmu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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