KEGG   PATHWAY: god00630
Entry
god00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Gordonia sp. 135
Class
Metabolism; Carbohydrate metabolism
Pathway map
god00630  Glyoxylate and dicarboxylate metabolism
god00630

Module
god_M00012  Glyoxylate cycle [PATH:god00630]
god_M00621  Glycine cleavage system [PATH:god00630]
god_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:god00630]
Other DBs
GO: 0046487 0043648
Organism
Gordonia sp. 135 [GN:god]
Gene
GKZ92_03310  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
GKZ92_00700  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
GKZ92_02355  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GKZ92_10435  malate synthase G [KO:K01638] [EC:2.3.3.9]
GKZ92_10370  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GKZ92_06040  citrate synthase [KO:K01647] [EC:2.3.3.1]
GKZ92_06095  citrate synthase [KO:K01647] [EC:2.3.3.1]
GKZ92_12065  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GKZ92_20115  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_20370  thiolase family protein [KO:K00626] [EC:2.3.1.9]
GKZ92_21285  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_15230  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_09115  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_16325  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_07185  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_07615  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_18845  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
GKZ92_18875  steroid 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
GKZ92_18975  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_19865  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_21005  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GKZ92_09110  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
GKZ92_08580  biotin/lipoyl-binding protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
GKZ92_08620  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
GKZ92_08615  acyl-CoA carboxylase subunit epsilon [KO:K27095]
GKZ92_14980  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
GKZ92_11975  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
GKZ92_11980  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
GKZ92_20180  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
GKZ92_21875  catalase [KO:K03781] [EC:1.11.1.6]
GKZ92_14880  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GKZ92_22060  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
GKZ92_15625  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
GKZ92_22490  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GKZ92_06235  glutamine synthetase type III [KO:K01915] [EC:6.3.1.2]
GKZ92_14800  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GKZ92_14830  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GKZ92_07765  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
GKZ92_08970  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
GKZ92_10425  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
GKZ92_14760  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GKZ92_03230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GKZ92_10400  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GKZ92_14735  hypothetical protein [KO:K00865] [EC:2.7.1.165]
GKZ92_08855  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GKZ92_03430  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
god00010  Glycolysis / Gluconeogenesis
god00020  Citrate cycle (TCA cycle)
god00030  Pentose phosphate pathway
god00053  Ascorbate and aldarate metabolism
god00071  Fatty acid degradation
god00230  Purine metabolism
god00250  Alanine, aspartate and glutamate metabolism
god00260  Glycine, serine and threonine metabolism
god00620  Pyruvate metabolism
god00710  Carbon fixation by Calvin cycle
god00750  Vitamin B6 metabolism
god00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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