KEGG   PATHWAY: goi00020
Entry
goi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gordonia otitidis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
goi00020  Citrate cycle (TCA cycle)
goi00020

Module
goi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:goi00020]
goi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:goi00020]
goi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:goi00020]
goi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:goi00020]
goi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:goi00020]
Other DBs
GO: 0006099
Organism
Gordonia otitidis [GN:goi]
Gene
LK459_01615  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
LK459_04230  citrate synthase [KO:K01647] [EC:2.3.3.1]
LK459_04305  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
LK459_10515  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LK459_10520  citrate synthase [KO:K01647] [EC:2.3.3.1]
LK459_21820  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LK459_21185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LK459_01255  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
LK459_05940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LK459_03795  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LK459_03800  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LK459_01810  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LK459_15940  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LK459_01815  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LK459_15935  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LK459_01800  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LK459_15945  succinate dehydrogenase cytochrome b subunit [KO:K00241]
LK459_01805  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
LK459_02300  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LK459_02305  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LK459_20435  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LK459_00065  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LK459_01610  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LK459_10975  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LK459_18910  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LK459_19145  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
goi00010  Glycolysis / Gluconeogenesis
goi00053  Ascorbate and aldarate metabolism
goi00061  Fatty acid biosynthesis
goi00071  Fatty acid degradation
goi00190  Oxidative phosphorylation
goi00220  Arginine biosynthesis
goi00250  Alanine, aspartate and glutamate metabolism
goi00280  Valine, leucine and isoleucine degradation
goi00350  Tyrosine metabolism
goi00470  D-Amino acid metabolism
goi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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