KEGG   PATHWAY: grb00020
Entry
grb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Granulicella sp. 5B5
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
grb00020  Citrate cycle (TCA cycle)
grb00020

Module
grb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:grb00020]
grb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:grb00020]
grb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:grb00020]
Other DBs
GO: 0006099
Organism
Granulicella sp. 5B5 [GN:grb]
Gene
GOB94_14895  citrate synthase [KO:K01647] [EC:2.3.3.1]
GOB94_07500  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GOB94_00175  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GOB94_03840  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
GOB94_04540  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GOB94_09260  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GOB94_06330  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GOB94_13055  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GOB94_13050  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GOB94_02800  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GOB94_02810  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GOB94_02795  succinate dehydrogenase [KO:K00241]
GOB94_11555  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GOB94_02855  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GOB94_06045  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
GOB94_13420  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
GOB94_09240  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
grb00010  Glycolysis / Gluconeogenesis
grb00053  Ascorbate and aldarate metabolism
grb00061  Fatty acid biosynthesis
grb00071  Fatty acid degradation
grb00190  Oxidative phosphorylation
grb00220  Arginine biosynthesis
grb00250  Alanine, aspartate and glutamate metabolism
grb00280  Valine, leucine and isoleucine degradation
grb00350  Tyrosine metabolism
grb00470  D-Amino acid metabolism
grb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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