KEGG   PATHWAY: gsb00020
Entry
gsb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geoalkalibacter subterraneus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gsb00020  Citrate cycle (TCA cycle)
gsb00020

Module
gsb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gsb00020]
gsb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gsb00020]
gsb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gsb00020]
gsb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gsb00020]
gsb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gsb00020]
Other DBs
GO: 0006099
Organism
Geoalkalibacter subterraneus [GN:gsb]
Gene
GSUB_05645  type I citrate synthase [KO:K01647] [EC:2.3.3.1]
GSUB_08440  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GSUB_04840  hypothetical protein [KO:K01682] [EC:4.2.1.3 4.2.1.99]
GSUB_04810  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GSUB_02640  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
GSUB_02645  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
GSUB_12350  hypothetical protein [KO:K00382] [EC:1.8.1.4]
GSUB_06820  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GSUB_04825  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GSUB_06825  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GSUB_04830  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GSUB_06830  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
GSUB_04835  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
GSUB_06815  hypothetical protein [KO:K00176] [EC:1.2.7.3]
GSUB_04820  tungsten formylmethanofuran dehydrogenase [KO:K00176] [EC:1.2.7.3]
GSUB_01830  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
GSUB_01825  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
GSUB_04110  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
GSUB_04105  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
GSUB_04115  fumarate reductase [KO:K00241]
GSUB_11495  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GSUB_00825  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
GSUB_04815  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GSUB_04775  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GSUB_15835  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GSUB_01310  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gsb00010  Glycolysis / Gluconeogenesis
gsb00053  Ascorbate and aldarate metabolism
gsb00061  Fatty acid biosynthesis
gsb00071  Fatty acid degradation
gsb00190  Oxidative phosphorylation
gsb00220  Arginine biosynthesis
gsb00250  Alanine, aspartate and glutamate metabolism
gsb00280  Valine, leucine and isoleucine degradation
gsb00350  Tyrosine metabolism
gsb00470  D-Amino acid metabolism
gsb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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