KEGG   PATHWAY: gvr00020
Entry
gvr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Galeopterus variegatus (Sunda flying lemur)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gvr00020  Citrate cycle (TCA cycle)
gvr00020

Module
gvr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gvr00020]
gvr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gvr00020]
gvr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gvr00020]
Other DBs
GO: 0006099
Organism
Galeopterus variegatus (Sunda flying lemur) [GN:gvr]
Gene
103594012  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
103589186  ACLY; LOW QUALITY PROTEIN: ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
103608574  LOW QUALITY PROTEIN: ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
103603350  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
103591655  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
103582033  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
103604038  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
103602461  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
103605074  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
103591951  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
103588318  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
103589732  OGDH; 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
103586272  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
103586175  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
103606310  SUCLG1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
103588782  SUCLG2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103602681  SUCLA2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103595526  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
103598851  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
103594389  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1 [KO:K00237]
103592505  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
103605152  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
103610410  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
103605408  PC; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
103590171  PCK2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
103590981  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
103596387  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
103597423  pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
103584267  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
103593560  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
103594393  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gvr00010  Glycolysis / Gluconeogenesis
gvr00053  Ascorbate and aldarate metabolism
gvr00061  Fatty acid biosynthesis
gvr00062  Fatty acid elongation
gvr00071  Fatty acid degradation
gvr00190  Oxidative phosphorylation
gvr00220  Arginine biosynthesis
gvr00250  Alanine, aspartate and glutamate metabolism
gvr00280  Valine, leucine and isoleucine degradation
gvr00350  Tyrosine metabolism
gvr00470  D-Amino acid metabolism
gvr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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