KEGG   PATHWAY: hald00020
Entry
hald00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Haliaeetus albicilla (white-tailed eagle)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hald00020  Citrate cycle (TCA cycle)
hald00020

Module
hald_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hald00020]
hald_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hald00020]
hald_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hald00020]
Other DBs
GO: 0006099
Organism
Haliaeetus albicilla (white-tailed eagle) [GN:hald]
Gene
104310673  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
104324684  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
104322192  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
104311850  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
104320850  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
104323588  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
104317165  OGDH; LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
104323326  OGDHL; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
104319812  DLST; LOW QUALITY PROTEIN: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
104310938  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
104316093  SUCLG1; succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
104314287  SUCLG2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104311107  SUCLA2; succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
104310943  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
104311618  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
104319806  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
104312848  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
104318473  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
104311560  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
104311313  MDH2; LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
104313114  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
104321387  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial [KO:K00161] [EC:1.2.4.1]
104318632  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
104318397  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hald00010  Glycolysis / Gluconeogenesis
hald00053  Ascorbate and aldarate metabolism
hald00061  Fatty acid biosynthesis
hald00062  Fatty acid elongation
hald00071  Fatty acid degradation
hald00190  Oxidative phosphorylation
hald00220  Arginine biosynthesis
hald00250  Alanine, aspartate and glutamate metabolism
hald00280  Valine, leucine and isoleucine degradation
hald00350  Tyrosine metabolism
hald00470  D-Amino acid metabolism
hald00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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