KEGG   PATHWAY: hali00020
Entry
hali00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halorientalis sp. IM1011
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hali00020  Citrate cycle (TCA cycle)
hali00020

Module
hali_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hali00020]
hali_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hali00020]
hali_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hali00020]
Other DBs
GO: 0006099
Organism
Halorientalis sp. IM1011 [GN:hali]
Gene
BV210_08900  citrate synthase [KO:K01659] [EC:2.3.3.5]
BV210_12545  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BV210_10040  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BV210_03435  oxoglutarate--ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BV210_03430  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BV210_15875  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BV210_15880  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BV210_04040  hypothetical protein [KO:K18118] [EC:2.8.3.18]
BV210_15485  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
BV210_15490  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
BV210_15835  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
BV210_15500  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BV210_15495  succinate dehydrogenase [KO:K00242]
BV210_16770  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
BV210_08680  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BV210_11845  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BV210_00695  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BV210_10065  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BV210_10060  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
BV210_10055  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
BV210_02215  2-ketoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
BV210_02210  2-ketoglutarate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hali00010  Glycolysis / Gluconeogenesis
hali00053  Ascorbate and aldarate metabolism
hali00061  Fatty acid biosynthesis
hali00071  Fatty acid degradation
hali00190  Oxidative phosphorylation
hali00220  Arginine biosynthesis
hali00250  Alanine, aspartate and glutamate metabolism
hali00280  Valine, leucine and isoleucine degradation
hali00350  Tyrosine metabolism
hali00470  D-Amino acid metabolism
hali00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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