KEGG   PATHWAY: haxz00020
Entry
haxz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Halorussus gelatinilyticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
haxz00020  Citrate cycle (TCA cycle)
haxz00020

Module
haxz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:haxz00020]
haxz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:haxz00020]
haxz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:haxz00020]
Other DBs
GO: 0006099
Organism
Halorussus gelatinilyticus [GN:haxz]
Gene
M0R88_07090  citrate synthase [KO:K01659] [EC:2.3.3.5]
M0R88_03895  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
M0R88_06975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M0R88_11375  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M0R88_11380  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M0R88_00980  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M0R88_00975  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M0R88_18015  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
M0R88_18010  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M0R88_18000  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
M0R88_18005  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
M0R88_16680  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M0R88_06715  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M0R88_14690  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
M0R88_06950  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M0R88_13385  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M0R88_02465  thiamine pyrophosphate-dependent enzyme [KO:K00161] [EC:1.2.4.1]
M0R88_06955  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
M0R88_06960  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
M0R88_13510  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
M0R88_13505  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
haxz00010  Glycolysis / Gluconeogenesis
haxz00053  Ascorbate and aldarate metabolism
haxz00061  Fatty acid biosynthesis
haxz00071  Fatty acid degradation
haxz00190  Oxidative phosphorylation
haxz00220  Arginine biosynthesis
haxz00250  Alanine, aspartate and glutamate metabolism
haxz00280  Valine, leucine and isoleucine degradation
haxz00350  Tyrosine metabolism
haxz00470  D-Amino acid metabolism
haxz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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