KEGG   PATHWAY: hazt03008
Entry
hazt03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Hyalella azteca
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
hazt03008  Ribosome biogenesis in eukaryotes
hazt03008

Organism
Hyalella azteca [GN:hazt]
Gene
108666431  casein kinase II subunit beta [KO:K03115]
108666437  casein kinase II subunit beta [KO:K03115]
108666438  casein kinase II subunit beta [KO:K03115]
108678036  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
108682908  nucleolar protein 6 isoform X2 [KO:K14544]
108679994  uncharacterized protein LOC108679994 [KO:K14546]
108679652  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
108677052  U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
108679523  HEAT repeat-containing protein 1 [KO:K14550]
108680023  WD repeat-containing protein 75 [KO:K14552]
108668088  U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
108677231  WD repeat-containing protein 36 [KO:K14554]
108679370  transducin beta-like protein 3 [KO:K14555]
108680771  uncharacterized protein LOC108680771 [KO:K14556]
108673023  WD repeat-containing protein 3 [KO:K14556]
108674459  uncharacterized protein LOC108674459 [KO:K14557]
108666043  periodic tryptophan protein 2 homolog [KO:K14558]
108675632  U3 small nucleolar ribonucleoprotein protein MPP10 [KO:K14559]
108676179  U3 small nucleolar ribonucleoprotein protein IMP3-like [KO:K14560]
108677064  U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
108677563  rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
108666568  nucleolar protein 56-like [KO:K14564]
108673620  nucleolar protein 56 [KO:K14564]
108678012  nucleolar protein 58 [KO:K14565]
108680336  NHP2-like protein 1 homolog [KO:K12845]
108669782  H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
108670931  H/ACA ribonucleoprotein complex subunit 2-like protein [KO:K11129]
108676566  H/ACA ribonucleoprotein complex subunit 1-like [KO:K11128]
108664493  rRNA-processing protein FCF1 homolog [KO:K14566]
108680480  U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
108667621  uncharacterized protein LOC108667621 [KO:K03685] [EC:3.1.26.3]
108683267  ribosomal RNA small subunit methyltransferase NEP1 [KO:K14568] [EC:2.1.1.260]
108683175  ribosome biogenesis protein BMS1 homolog [KO:K14569]
108676528  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
108673606  RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
108669806  RNA 3'-terminal phosphate cyclase-like protein [KO:K11108]
108672012  ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
108680466  phosphatidylinositol-glycan biosynthesis class F protein isoform X2 [KO:K14523] [EC:3.1.26.5]
108666098  uncharacterized protein LOC108666098 [KO:K03537] [EC:3.1.26.5]
108679947  ribonuclease P protein subunit drpp30 [KO:K03539] [EC:3.1.26.5]
108666386  uncharacterized protein LOC108666386 isoform X1 [KO:K03539] [EC:3.1.26.5]
108669915  ribonuclease P protein subunit p40 [KO:K14530] [EC:3.1.26.5]
108679730  uncharacterized protein LOC108679730 [KO:K14530] [EC:3.1.26.5]
108667573  uncharacterized protein LOC108667573 [KO:K14570] [EC:3.1.-.-]
108677628  uncharacterized protein LOC108677628 isoform X1 [KO:K14570] [EC:3.1.-.-]
108679747  oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
108670227  5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
108670681  5'-3' exoribonuclease 1 isoform X1 [KO:K12618] [EC:3.1.13.-]
108672857  5'-3' exoribonuclease 1-like [KO:K12618] [EC:3.1.13.-]
108683224  LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2 homolog [KO:K12619] [EC:3.1.13.-]
108676479  GTP-binding protein 4 [KO:K06943]
108681570  LOW QUALITY PROTEIN: nucleolar GTP-binding protein 2 [KO:K14537]
108669410  guanine nucleotide-binding protein-like 3 homolog [KO:K14538]
108676127  nuclear valosin-containing protein-like [KO:K14571]
108679548  uncharacterized AAA domain-containing protein C16E9.10c [KO:K14571]
108678187  midasin [KO:K14572]
108668823  polyadenylate-binding protein 8 [KO:K14573]
108680310  RNA-binding protein 28 [KO:K14573]
108670679  RNA-binding protein NOB1 isoform X1 [KO:K11883]
108682776  GTP-binding nuclear protein Ran [KO:K07936]
108669855  exportin-1 [KO:K14290]
108676660  60S ribosomal export protein NMD3 [KO:K07562]
108667227  nuclear RNA export factor 1 [KO:K14284]
108671321  nuclear RNA export factor 1 [KO:K14284]
108682557  NTF2-related export protein [KO:K14285]
108664945  eukaryotic translation initiation factor 6 [KO:K03264]
108673732  ribosome maturation protein SBDS [KO:K14574]
108671938  elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
108666232  large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
108672260  transitional endoplasmic reticulum ATPase [KO:K14575]
108682939  adenylate kinase isoenzyme 6 [KO:K18532] [EC:2.7.4.3]
108678936  serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
108674103  serine/threonine-protein kinase rio2 [KO:K07179] [EC:2.7.11.1]
125179512  small subunit ribosomal RNA [KO:K01979]
125179508  large subunit ribosomal RNA [KO:K01982]
125178603  5S ribosomal RNA [KO:K01981]
125178022  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
hazt03010  Ribosome
KO pathway
ko03008   
LinkDB

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