KEGG   PATHWAY: hba00020
Entry
hba00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hirschia baltica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hba00020  Citrate cycle (TCA cycle)
hba00020

Module
hba_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hba00020]
hba_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hba00020]
hba_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hba00020]
hba_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hba00020]
Other DBs
GO: 0006099
Organism
Hirschia baltica [GN:hba]
Gene
Hbal_1703  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Hbal_0092  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Hbal_2704  Aconitase B, N-terminal [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Hbal_0575  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Hbal_2245  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Hbal_2244  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Hbal_1685  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Hbal_1617  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Hbal_2239  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Hbal_2246  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Hbal_2247  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Hbal_0303  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Hbal_0305  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Hbal_0301  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Hbal_0302  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Hbal_0437  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Hbal_2253  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Hbal_1688  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Hbal_1687  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Hbal_1686  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hba00010  Glycolysis / Gluconeogenesis
hba00053  Ascorbate and aldarate metabolism
hba00061  Fatty acid biosynthesis
hba00071  Fatty acid degradation
hba00190  Oxidative phosphorylation
hba00220  Arginine biosynthesis
hba00250  Alanine, aspartate and glutamate metabolism
hba00280  Valine, leucine and isoleucine degradation
hba00350  Tyrosine metabolism
hba00470  D-Amino acid metabolism
hba00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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