KEGG   PATHWAY: hcq00020
Entry
hcq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hippocampus comes (tiger tail seahorse)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hcq00020  Citrate cycle (TCA cycle)
hcq00020

Module
hcq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hcq00020]
hcq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hcq00020]
hcq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hcq00020]
hcq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hcq00020]
hcq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hcq00020]
Other DBs
GO: 0006099
Organism
Hippocampus comes (tiger tail seahorse) [GN:hcq]
Gene
109513367  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109532620  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
109523948  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
109512280  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109522808  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
109516404  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109512661  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
109522990  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
109514518  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
109519467  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109522268  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109522996  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
109520212  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
109509951  2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
109507151  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
109525276  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
109507749  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
109507936  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109519910  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109517043  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109509871  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109529672  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
109517774  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
109522391  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
109529551  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
109510914  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
109532141  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
109512633  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
109526679  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
109531051  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109515072  pc; LOW QUALITY PROTEIN: pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
109510298  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] isoform X1 [KO:K01596] [EC:4.1.1.32]
109527863  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
109518662  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
109517947  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
109517948  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
109510341  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
109517998  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hcq00010  Glycolysis / Gluconeogenesis
hcq00053  Ascorbate and aldarate metabolism
hcq00061  Fatty acid biosynthesis
hcq00062  Fatty acid elongation
hcq00071  Fatty acid degradation
hcq00190  Oxidative phosphorylation
hcq00220  Arginine biosynthesis
hcq00250  Alanine, aspartate and glutamate metabolism
hcq00280  Valine, leucine and isoleucine degradation
hcq00350  Tyrosine metabolism
hcq00470  D-Amino acid metabolism
hcq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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