KEGG   PATHWAY: hli00020
Entry
hli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halobacillus litoralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hli00020  Citrate cycle (TCA cycle)
hli00020

Module
hli_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hli00020]
hli_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hli00020]
hli_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hli00020]
hli_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hli00020]
hli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hli00020]
Other DBs
GO: 0006099
Organism
Halobacillus litoralis [GN:hli]
Gene
HLI_17975  citrate synthase [KO:K01647] [EC:2.3.3.1]
HLI_13700  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HLI_01155  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HLI_17980  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
HLI_05905  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HLI_05900  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HLI_02565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLI_19565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HLI_01745  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HLI_01750  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HLI_18210  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HLI_18215  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HLI_18205  succinate dehydrogenase [KO:K00241]
HLI_05485  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HLI_17985  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HLI_20605  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HLI_12475  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HLI_02400  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HLI_17515  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HLI_02580  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HLI_02575  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HLI_02570  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hli00010  Glycolysis / Gluconeogenesis
hli00053  Ascorbate and aldarate metabolism
hli00061  Fatty acid biosynthesis
hli00071  Fatty acid degradation
hli00190  Oxidative phosphorylation
hli00220  Arginine biosynthesis
hli00250  Alanine, aspartate and glutamate metabolism
hli00280  Valine, leucine and isoleucine degradation
hli00350  Tyrosine metabolism
hli00470  D-Amino acid metabolism
hli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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