KEGG   PATHWAY: hma00020
Entry
hma00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haloarcula marismortui
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hma00020  Citrate cycle (TCA cycle)
hma00020

Module
hma_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hma00020]
hma_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hma00020]
hma_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hma00020]
hma_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hma00020]
hma_M00740  Methylaspartate cycle [PATH:hma00020]
Other DBs
GO: 0006099
Organism
Haloarcula marismortui [GN:hma]
Gene
rrnAC2511  citZ; citrate synthase II [KO:K01659] [EC:2.3.3.5]
pNG6049  acnA; aconitate hydratase I [KO:K27802] [EC:4.2.1.3 4.2.1.99]
rrnAC3419  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
rrnAC2953  lpdA2; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
rrnB0197  lpdA3; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
rrnAC0718  porA; pyruvate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
rrnAC0719  porB; pyruvate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
rrnAC0474  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
rrnAC0472  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
rrnAC0141  sdhA2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
rrnAC1097  sdhA1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
rrnAC1093  sdhB; succinate dehydrogenase iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
rrnAC1091  sdhC; succinate dehydrogenase subunit C [KO:K00241]
rrnAC1092  unknown [KO:K00242]
rrnAC0028  fumC; fumarate hydratase class-II [KO:K01679] [EC:4.2.1.2]
rrnAC2706  mdh; L-malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
rrnAC0149  pdhA1; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
rrnB0200  pdhA2; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
rrnAC2957  pdhA3; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
rrnAC2956  pdhB1; pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
rrnB0199  pdhB2; pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
rrnB0198  pdhC1; dihydrolipoamide S-acetyltransferase component of pyruvate dehydrogenase complex E2 [KO:K00627] [EC:2.3.1.12]
rrnAC2955  pdhC2; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
rrnAC1267  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00169] [EC:1.2.7.1]
rrnAC1268  korB; putative 2-ketoglutarate ferredoxin oxidoreductase (beta) [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hma00010  Glycolysis / Gluconeogenesis
hma00053  Ascorbate and aldarate metabolism
hma00061  Fatty acid biosynthesis
hma00071  Fatty acid degradation
hma00190  Oxidative phosphorylation
hma00220  Arginine biosynthesis
hma00250  Alanine, aspartate and glutamate metabolism
hma00280  Valine, leucine and isoleucine degradation
hma00350  Tyrosine metabolism
hma00470  D-Amino acid metabolism
hma00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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