KEGG   PATHWAY: hme00020
Entry
hme00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haloferax mediterranei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hme00020  Citrate cycle (TCA cycle)
hme00020

Module
hme_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hme00020]
hme_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hme00020]
hme_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hme00020]
hme_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hme00020]
Other DBs
GO: 0006099
Organism
Haloferax mediterranei [GN:hme]
Gene
HFX_6170  gltA; citrate (si)-synthase [KO:K01647] [EC:2.3.3.1]
HFX_0432  citZ; citrate (si)-synthase [KO:K01659] [EC:2.3.3.5]
HFX_0511  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
HFX_2613  icd; isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
HFX_2955  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
HFX_0862  korA; 2-oxoglutarate ferredoxin oxidoreductase, subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HFX_0861  korB; 2-oxoglutarate ferredoxin oxidoreductase, subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HFX_2471  sucD; succinate--CoA ligase, alpha subunit (ADP-forming) [KO:K01902] [EC:6.2.1.5]
HFX_2472  sucC; succinate--CoA ligase beta subunit (ADP-forming) [KO:K01903] [EC:6.2.1.5]
HFX_2823  sdhA; succinate dehydrogenase, subunit A (flavoprotein) [KO:K00239] [EC:1.3.5.1]
HFX_2824  sdhB; succinate dehydrogenase, subunit B (iron-sulfur protein) [KO:K00240] [EC:1.3.5.1]
HFX_2826  sdhC; succinate dehydrogenase, subunit C (cytochrome b-556) [KO:K00241]
HFX_2825  sdhD; succinate dehydrogenase, subunit D (membrane anchor protein) [KO:K00242]
HFX_2897  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
HFX_3026  mdhA; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HFX_2952  pdhA1; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HFX_2266  oxdhA2; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HFX_6038  pdhA2; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HFX_2953  pdhB1; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HFX_6037  pdhB2; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HFX_2954  pdhC; dihydrolipoamide S-acyltransferase (pyruvate dehydrogenase E2 component) [KO:K00627] [EC:2.3.1.12]
HFX_1371  porA; pyruvate--ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
HFX_1370  porB; pyruvate--ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hme00010  Glycolysis / Gluconeogenesis
hme00061  Fatty acid biosynthesis
hme00071  Fatty acid degradation
hme00190  Oxidative phosphorylation
hme00220  Arginine biosynthesis
hme00250  Alanine, aspartate and glutamate metabolism
hme00280  Valine, leucine and isoleucine degradation
hme00350  Tyrosine metabolism
hme00470  D-Amino acid metabolism
hme00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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