KEGG   PATHWAY: hmn00020
Entry
hmn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Halobacillus mangrovi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hmn00020  Citrate cycle (TCA cycle)
hmn00020

Module
hmn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hmn00020]
hmn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hmn00020]
hmn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hmn00020]
hmn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hmn00020]
hmn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hmn00020]
Other DBs
GO: 0006099
Organism
Halobacillus mangrovi [GN:hmn]
Gene
HM131_08195  citrate synthase [KO:K01647] [EC:2.3.3.1]
HM131_11100  hypothetical protein [KO:K01647] [EC:2.3.3.1]
HM131_11395  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
HM131_03270  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
HM131_08200  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HM131_15720  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HM131_15715  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
HM131_09835  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HM131_12600  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HM131_11850  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HM131_11855  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HM131_08430  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HM131_08435  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HM131_08425  succinate dehydrogenase [KO:K00241]
HM131_15285  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
HM131_08205  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HM131_05500  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HM131_02025  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HM131_12470  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HM131_07695  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HM131_12615  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HM131_12610  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HM131_12605  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hmn00010  Glycolysis / Gluconeogenesis
hmn00053  Ascorbate and aldarate metabolism
hmn00061  Fatty acid biosynthesis
hmn00071  Fatty acid degradation
hmn00190  Oxidative phosphorylation
hmn00220  Arginine biosynthesis
hmn00250  Alanine, aspartate and glutamate metabolism
hmn00280  Valine, leucine and isoleucine degradation
hmn00350  Tyrosine metabolism
hmn00470  D-Amino acid metabolism
hmn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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