KEGG   PATHWAY: hmt00020
Entry
hmt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hymenobacter monticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hmt00020  Citrate cycle (TCA cycle)
hmt00020

Module
hmt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hmt00020]
hmt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hmt00020]
hmt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hmt00020]
hmt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hmt00020]
hmt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hmt00020]
Other DBs
GO: 0006099
Organism
Hymenobacter monticola [GN:hmt]
Gene
MTP16_15925  citrate synthase [KO:K01647] [EC:2.3.3.1]
MTP16_14180  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MTP16_04765  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MTP16_10535  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MTP16_06610  isocitrate/isopropylmalate family dehydrogenase [KO:K00030] [EC:1.1.1.41]
MTP16_01710  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MTP16_01705  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
MTP16_18885  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
MTP16_01650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTP16_18460  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MTP16_10580  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
MTP16_14385  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
MTP16_14120  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MTP16_14115  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MTP16_14125  succinate dehydrogenase cytochrome b subunit [KO:K00241]
MTP16_05965  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
MTP16_12235  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MTP16_16520  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MTP16_16805  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MTP16_19200  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MTP16_06205  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MTP16_20080  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MTP16_21385  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hmt00010  Glycolysis / Gluconeogenesis
hmt00053  Ascorbate and aldarate metabolism
hmt00061  Fatty acid biosynthesis
hmt00071  Fatty acid degradation
hmt00190  Oxidative phosphorylation
hmt00220  Arginine biosynthesis
hmt00250  Alanine, aspartate and glutamate metabolism
hmt00280  Valine, leucine and isoleucine degradation
hmt00350  Tyrosine metabolism
hmt00470  D-Amino acid metabolism
hmt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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