KEGG   PATHWAY: hoh00020
Entry
hoh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Haliangium ochraceum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hoh00020  Citrate cycle (TCA cycle)
hoh00020

Module
hoh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hoh00020]
hoh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hoh00020]
hoh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hoh00020]
hoh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hoh00020]
Other DBs
GO: 0006099
Organism
Haliangium ochraceum [GN:hoh]
Gene
Hoch_4737  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Hoch_3584  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Hoch_6684  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Hoch_1645  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Hoch_0287  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
Hoch_4994  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Hoch_4995  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Hoch_4996  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Hoch_3234  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Hoch_0240  pyridine nucleotide-disulphide oxidoreductase dimerization region [KO:K00382] [EC:1.8.1.4]
Hoch_3705  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Hoch_0072  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Hoch_0071  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Hoch_5148  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Hoch_5147  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Hoch_5880  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Hoch_5879  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Hoch_5881  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Hoch_5566  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Hoch_4795  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Hoch_4268  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Hoch_2005  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Hoch_3708  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Hoch_3237  3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [KO:K00161] [EC:1.2.4.1]
Hoch_3707  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Hoch_3236  Transketolase central region [KO:K00162] [EC:1.2.4.1]
Hoch_3706  Dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Hoch_3235  catalytic domain of components of various dehydrogenase complexes [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hoh00010  Glycolysis / Gluconeogenesis
hoh00053  Ascorbate and aldarate metabolism
hoh00061  Fatty acid biosynthesis
hoh00071  Fatty acid degradation
hoh00190  Oxidative phosphorylation
hoh00220  Arginine biosynthesis
hoh00250  Alanine, aspartate and glutamate metabolism
hoh00280  Valine, leucine and isoleucine degradation
hoh00350  Tyrosine metabolism
hoh00470  D-Amino acid metabolism
hoh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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