KEGG   PATHWAY: hro00020
Entry
hro00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helobdella robusta
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hro00020  Citrate cycle (TCA cycle)
hro00020

Module
hro_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hro00020]
hro_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hro00020]
hro_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hro00020]
hro_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hro00020]
hro_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hro00020]
Other DBs
GO: 0006099
Organism
Helobdella robusta [GN:hro]
Gene
HELRODRAFT_96242  hypothetical protein [KO:K01647] [EC:2.3.3.1]
HELRODRAFT_155589  hypothetical protein [KO:K01648] [EC:2.3.3.8]
HELRODRAFT_185009  hypothetical protein [KO:K01681] [EC:4.2.1.3]
HELRODRAFT_189761  hypothetical protein [KO:K01681] [EC:4.2.1.3]
HELRODRAFT_114417  hypothetical protein [KO:K00031] [EC:1.1.1.42]
HELRODRAFT_193324  hypothetical protein [KO:K00031] [EC:1.1.1.42]
HELRODRAFT_185474  hypothetical protein [KO:K00030] [EC:1.1.1.41]
HELRODRAFT_185220  hypothetical protein [KO:K00030] [EC:1.1.1.41]
HELRODRAFT_192693  hypothetical protein [KO:K00164] [EC:1.2.4.2]
HELRODRAFT_80560  hypothetical protein [KO:K00658] [EC:2.3.1.61]
HELRODRAFT_184998  hypothetical protein [KO:K00382] [EC:1.8.1.4]
HELRODRAFT_186113  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
HELRODRAFT_103352  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
HELRODRAFT_190256  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
HELRODRAFT_94219  hypothetical protein [KO:K00234] [EC:1.3.5.1]
HELRODRAFT_185494  hypothetical protein [KO:K00235] [EC:1.3.5.1]
HELRODRAFT_76590  hypothetical protein [KO:K00236]
HELRODRAFT_66046  hypothetical protein [KO:K00237]
HELRODRAFT_103347  hypothetical protein [KO:K01676] [EC:4.2.1.2]
HELRODRAFT_161397  hypothetical protein [KO:K01679] [EC:4.2.1.2]
HELRODRAFT_193969  hypothetical protein [KO:K00025] [EC:1.1.1.37]
HELRODRAFT_186114  hypothetical protein [KO:K00025] [EC:1.1.1.37]
HELRODRAFT_168229  hypothetical protein [KO:K00025] [EC:1.1.1.37]
HELRODRAFT_104724  hypothetical protein [KO:K00026] [EC:1.1.1.37]
HELRODRAFT_185773  hypothetical protein [KO:K00026] [EC:1.1.1.37]
HELRODRAFT_99990  hypothetical protein [KO:K01958] [EC:6.4.1.1]
HELRODRAFT_88036  hypothetical protein [KO:K01596] [EC:4.1.1.32]
HELRODRAFT_156671  hypothetical protein [KO:K01596] [EC:4.1.1.32]
HELRODRAFT_106117  hypothetical protein [KO:K01596] [EC:4.1.1.32]
HELRODRAFT_109161  hypothetical protein [KO:K01596] [EC:4.1.1.32]
HELRODRAFT_189197  hypothetical protein [KO:K00161] [EC:1.2.4.1]
HELRODRAFT_155705  hypothetical protein [KO:K00162] [EC:1.2.4.1]
HELRODRAFT_111522  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hro00010  Glycolysis / Gluconeogenesis
hro00053  Ascorbate and aldarate metabolism
hro00061  Fatty acid biosynthesis
hro00062  Fatty acid elongation
hro00071  Fatty acid degradation
hro00190  Oxidative phosphorylation
hro00220  Arginine biosynthesis
hro00250  Alanine, aspartate and glutamate metabolism
hro00280  Valine, leucine and isoleucine degradation
hro00350  Tyrosine metabolism
hro00470  D-Amino acid metabolism
hro00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system