KEGG   PATHWAY: hrt00020
Entry
hrt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hirundo rustica (Barn swallow)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hrt00020  Citrate cycle (TCA cycle)
hrt00020

Module
hrt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hrt00020]
hrt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:hrt00020]
hrt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hrt00020]
hrt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:hrt00020]
hrt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hrt00020]
Other DBs
GO: 0006099
Organism
Hirundo rustica (Barn swallow) [GN:hrt]
Gene
120764461  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
120763649  ACLY; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
120751564  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
120765359  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
120758579  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
120755021  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
120752609  IDH3B; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
120759007  IDH3A; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
120763992  OGDH; 2-oxoglutarate dehydrogenase complex component E1 isoform X3 [KO:K00164] [EC:1.2.4.2]
120755977  OGDHL; LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
120753663  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
120751484  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
120753084  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120758315  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120749207  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120753702  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
120762224  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
120748330  SDHC; LOW QUALITY PROTEIN: succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
120762621  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
120753768  FH; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
120751054  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
120761342  MDH2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
120760224  PCK1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
120765923  PDHA1; pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
120758476  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
120762573  DLAT; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hrt00010  Glycolysis / Gluconeogenesis
hrt00053  Ascorbate and aldarate metabolism
hrt00061  Fatty acid biosynthesis
hrt00062  Fatty acid elongation
hrt00071  Fatty acid degradation
hrt00190  Oxidative phosphorylation
hrt00220  Arginine biosynthesis
hrt00250  Alanine, aspartate and glutamate metabolism
hrt00280  Valine, leucine and isoleucine degradation
hrt00350  Tyrosine metabolism
hrt00470  D-Amino acid metabolism
hrt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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