KEGG   PATHWAY: hsyr00020
Entry
hsyr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Hibiscus syriacus (Rose-of-Sharon)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hsyr00020  Citrate cycle (TCA cycle)
hsyr00020

Module
hsyr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hsyr00020]
hsyr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hsyr00020]
hsyr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hsyr00020]
Other DBs
GO: 0006099
Organism
Hibiscus syriacus (Rose-of-Sharon) [GN:hsyr]
Gene
120131308  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
120215027  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
120135825  LOW QUALITY PROTEIN: citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
120121795  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
120140566  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
120190588  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
120213087  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
120163474  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
120115697  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
120216091  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
120150644  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
120183231  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
120184294  ATP-citrate synthase alpha chain protein 1-like [KO:K01648] [EC:2.3.3.8]
120204427  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
120142630  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
120127926  ATP-citrate synthase beta chain protein 2-like [KO:K01648] [EC:2.3.3.8]
120178936  aconitate hydratase, cytoplasmic-like [KO:K01681] [EC:4.2.1.3]
120183827  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
120184320  aconitate hydratase, cytoplasmic-like isoform X1 [KO:K01681] [EC:4.2.1.3]
120153123  LOW QUALITY PROTEIN: aconitate hydratase 1-like [KO:K01681] [EC:4.2.1.3]
120169483  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
120197124  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
120169981  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
120123306  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
120141442  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
120125206  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial-like [KO:K00031] [EC:1.1.1.42]
120177121  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
120161818  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
120130629  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120130655  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120214207  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120115859  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120132337  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
120180917  LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120182049  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120150713  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial [KO:K00030] [EC:1.1.1.41]
120174611  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
120115441  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
120187553  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
120205800  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
120129584  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
120197782  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
120202431  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
120170370  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
120189411  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
120160461  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
120213885  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120114971  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
120198870  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
120152579  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
120188461  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120158583  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
120178536  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
120163742  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120132042  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120215006  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120149563  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120134010  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
120133221  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120166137  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120166138  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120167730  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120167732  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
120130920  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
120152465  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
120153144  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
120121682  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
120195743  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
120113825  succinate dehydrogenase cytochrome b560 subunit-like [KO:K00236]
120162624  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
120116736  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
120185436  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
120165500  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
120120238  fumarate hydratase 1, mitochondrial [KO:K01679] [EC:4.2.1.2]
120188644  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
120189075  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
120172412  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
120114588  malate dehydrogenase-like [KO:K00025] [EC:1.1.1.37]
120201195  malate dehydrogenase 2, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120201499  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120218296  malate dehydrogenase 2, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120208294  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
120161360  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
120114150  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
120132457  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120181371  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120199920  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
120134689  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
120201665  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
120168867  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120219449  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
120205239  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
120125638  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
120142806  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120158576  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
120166906  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
120138129  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
120141834  phosphoenolpyruvate carboxykinase (ATP) 1-like isoform X1 [KO:K01610] [EC:4.1.1.49]
120126713  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
120195597  phosphoenolpyruvate carboxykinase (ATP) 1-like [KO:K01610] [EC:4.1.1.49]
120148553  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
120215246  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
120149470  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
120184683  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
120120208  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
120188597  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
120205671  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
120206499  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
120196337  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
120131505  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
120216108  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120216865  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
120184243  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120203141  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120204134  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
120171306  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120171965  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120123925  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120190672  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
120176045  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120128180  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
120213217  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
120180699  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
120197685  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
120131612  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
120148526  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
120133350  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
120217067  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
120156247  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
120190271  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
120174727  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hsyr00010  Glycolysis / Gluconeogenesis
hsyr00053  Ascorbate and aldarate metabolism
hsyr00061  Fatty acid biosynthesis
hsyr00062  Fatty acid elongation
hsyr00071  Fatty acid degradation
hsyr00190  Oxidative phosphorylation
hsyr00220  Arginine biosynthesis
hsyr00250  Alanine, aspartate and glutamate metabolism
hsyr00280  Valine, leucine and isoleucine degradation
hsyr00350  Tyrosine metabolism
hsyr00470  D-Amino acid metabolism
hsyr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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