KEGG   PATHWAY: hvi00020
Entry
hvi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Homalodisca vitripennis (glassy-winged sharpshooter)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hvi00020  Citrate cycle (TCA cycle)
hvi00020

Module
hvi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hvi00020]
hvi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hvi00020]
hvi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hvi00020]
Other DBs
GO: 0006099
Organism
Homalodisca vitripennis (glassy-winged sharpshooter) [GN:hvi]
Gene
124360483  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
124363005  ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
124352865  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
124355634  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
124359571  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
124361822  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
124359152  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
124370018  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
124363784  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
124365736  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
124352912  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
124357210  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
124372595  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
124365994  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
124369010  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124359613  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124355785  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124362281  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
124362282  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
124362283  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
124366366  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
124366605  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
124360237  succinate dehydrogenase cytochrome b556 subunit-like [KO:K00236]
124371084  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
124357287  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
124357002  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
124367887  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124367888  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124368661  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
124356944  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
124370198  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
124359349  pyruvate dehydrogenase E1 component subunit alpha type II, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
124359755  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
124359074  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like isoform X1 [KO:K00162] [EC:1.2.4.1]
124369005  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
124362142  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
124357429  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hvi00010  Glycolysis / Gluconeogenesis
hvi00053  Ascorbate and aldarate metabolism
hvi00061  Fatty acid biosynthesis
hvi00062  Fatty acid elongation
hvi00071  Fatty acid degradation
hvi00190  Oxidative phosphorylation
hvi00220  Arginine biosynthesis
hvi00250  Alanine, aspartate and glutamate metabolism
hvi00280  Valine, leucine and isoleucine degradation
hvi00350  Tyrosine metabolism
hvi00470  D-Amino acid metabolism
hvi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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