KEGG   PATHWAY: hyn00630
Entry
hyn00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Hydrogenophaga sp. BPS33
Class
Metabolism; Carbohydrate metabolism
Pathway map
hyn00630  Glyoxylate and dicarboxylate metabolism
hyn00630

Module
hyn_M00012  Glyoxylate cycle [PATH:hyn00630]
hyn_M00621  Glycine cleavage system [PATH:hyn00630]
Other DBs
GO: 0046487 0043648
Organism
Hydrogenophaga sp. BPS33 [GN:hyn]
Gene
F9K07_16680  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
F9K07_02610  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
F9K07_23000  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
F9K07_16990  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
F9K07_27590  malate synthase G [KO:K01638] [EC:2.3.3.9]
F9K07_09695  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F9K07_09660  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F9K07_07115  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
F9K07_26950  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
F9K07_11825  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
F9K07_09725  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
F9K07_09705  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
F9K07_02645  thiolase family protein [KO:K00626] [EC:2.3.1.9]
F9K07_12110  thiolase family protein [KO:K00626] [EC:2.3.1.9]
F9K07_24720  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
F9K07_14675  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_06790  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_21670  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
F9K07_10765  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
F9K07_04845  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_26065  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
F9K07_03920  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_08235  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
F9K07_02990  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_03150  hypothetical protein [KO:K00626] [EC:2.3.1.9]
F9K07_13555  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_13670  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_22105  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
F9K07_22225  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
F9K07_13675  phbB; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
F9K07_00140  CoA ester lyase [KO:K08691] [EC:4.1.3.24 4.1.3.25]
F9K07_13805  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K01965] [EC:6.4.1.3]
F9K07_13800  acyl-CoA carboxylase subunit beta [KO:K01966] [EC:6.4.1.3 2.1.3.15]
F9K07_13780  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
F9K07_01800  methylmalonyl-CoA mutase [KO:K01849] [EC:5.4.99.2]
F9K07_00550  cobalamin B12-binding domain-containing protein [KO:K01849] [EC:5.4.99.2]
F9K07_01795  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
F9K07_00545  methylmalonyl-CoA mutase [KO:K01848] [EC:5.4.99.2]
F9K07_27405  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
F9K07_01610  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
F9K07_01615  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
F9K07_20560  catalase [KO:K03781] [EC:1.11.1.6]
F9K07_04000  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
F9K07_12330  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
F9K07_16955  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
F9K07_09445  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
F9K07_26935  gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
F9K07_13630  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F9K07_01075  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F9K07_01115  type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
F9K07_31170  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F9K07_31315  hypothetical protein [KO:K01915] [EC:6.3.1.2]
F9K07_19760  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
F9K07_24750  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
F9K07_18920  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
F9K07_19430  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
F9K07_19420  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
F9K07_02830  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F9K07_13235  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F9K07_13290  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F9K07_19425  gcvH; glycine cleavage system protein GcvH [KO:K02437]
F9K07_08570  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
F9K07_08575  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
F9K07_26460  glxR; 2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
F9K07_08580  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
F9K07_21295  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
F9K07_08585  glycerate kinase [KO:K11529] [EC:2.7.1.165]
F9K07_12410  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
F9K07_20235  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
F9K07_14980  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F9K07_06475  formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
F9K07_14985  NADH-quinone oxidoreductase subunit F [KO:K22515] [EC:1.17.1.9]
F9K07_06470  4Fe-4S dicluster domain-containing protein [KO:K00124]
F9K07_06460  formate dehydrogenase subunit gamma [KO:K00127]
F9K07_21290  alpha/beta hydrolase [KO:K01432] [EC:3.5.1.9]
F9K07_10085  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
F9K07_27390  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
hyn00010  Glycolysis / Gluconeogenesis
hyn00020  Citrate cycle (TCA cycle)
hyn00030  Pentose phosphate pathway
hyn00053  Ascorbate and aldarate metabolism
hyn00071  Fatty acid degradation
hyn00230  Purine metabolism
hyn00250  Alanine, aspartate and glutamate metabolism
hyn00260  Glycine, serine and threonine metabolism
hyn00620  Pyruvate metabolism
hyn00710  Carbon fixation by Calvin cycle
hyn00750  Vitamin B6 metabolism
hyn00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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