KEGG   PATHWAY: hyp00020
Entry
hyp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Hymenobacter psoromatis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hyp00020  Citrate cycle (TCA cycle)
hyp00020

Module
hyp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:hyp00020]
hyp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hyp00020]
hyp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hyp00020]
Other DBs
GO: 0006099
Organism
Hymenobacter psoromatis [GN:hyp]
Gene
A0257_01235  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A0257_00675  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
A0257_18450  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A0257_00245  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A0257_02770  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A0257_11865  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
A0257_14465  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
A0257_14450  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A0257_01520  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
A0257_14440  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0257_05805  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0257_19360  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A0257_20895  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A0257_18475  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
A0257_18470  fumarate reductase [KO:K00240] [EC:1.3.5.1]
A0257_12700  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A0257_02130  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A0257_20305  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A0257_07355  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A0257_02285  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A0257_14195  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A0257_20020  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
A0257_00965  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hyp00010  Glycolysis / Gluconeogenesis
hyp00053  Ascorbate and aldarate metabolism
hyp00061  Fatty acid biosynthesis
hyp00071  Fatty acid degradation
hyp00190  Oxidative phosphorylation
hyp00220  Arginine biosynthesis
hyp00250  Alanine, aspartate and glutamate metabolism
hyp00280  Valine, leucine and isoleucine degradation
hyp00350  Tyrosine metabolism
hyp00470  D-Amino acid metabolism
hyp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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