KEGG   PATHWAY: iel00020
Entry
iel00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ischnura elegans (blue-tailed damselfly)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
iel00020  Citrate cycle (TCA cycle)
iel00020

Module
iel_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:iel00020]
iel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:iel00020]
iel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:iel00020]
iel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:iel00020]
iel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:iel00020]
Other DBs
GO: 0006099
Organism
Ischnura elegans (blue-tailed damselfly) [GN:iel]
Gene
124164004  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
124157197  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
124170438  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
124163334  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
124159328  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
124161183  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
124166687  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
124171692  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
124161996  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
124153585  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
124160815  2-oxoglutarate dehydrogenase, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
124168241  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
124166960  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
124155451  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
124170673  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124161308  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124164539  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
124155733  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
124159186  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
124157992  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
124167820  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
124154716  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
124157844  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
124155753  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
124154437  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
124155717  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
124161512  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
124163615  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
124164269  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
iel00010  Glycolysis / Gluconeogenesis
iel00053  Ascorbate and aldarate metabolism
iel00061  Fatty acid biosynthesis
iel00062  Fatty acid elongation
iel00071  Fatty acid degradation
iel00190  Oxidative phosphorylation
iel00220  Arginine biosynthesis
iel00250  Alanine, aspartate and glutamate metabolism
iel00280  Valine, leucine and isoleucine degradation
iel00350  Tyrosine metabolism
iel00470  D-Amino acid metabolism
iel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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