KEGG   PATHWAY: ifu04744
Entry
ifu04744                    Pathway                                
Name
Phototransduction - Ictalurus furcatus (blue catfish)
Description
Phototransduction is a biochemical process by which the photoreceptor cells generate electrical signals in response to captured photons. The vertebrate cascade starts with the absorption of photons by the photoreceptive pigments, the rhodopsins, which consist of a membrane embedded chromophore, 11-cis-retinal, and a G-protein-coupled receptor, opsin. The photon isomerizes 11-cis-retinal to all-trans-retinal which induces a structural change that activates the opsin. This triggers hydrolysis of cGMP by activating a transducinphosphodiesterase 6 (PDE6) cascade, which results in closure of the cGMP-gated cation channels (CNG) in the plasma membrane and membrane hyperpolarization. The hyperpolarization of the membrane potential of the photoreceptor cell modulates the release of neurotransmitters to downstream cells. Recovery from light involves the deactivation of the light- activated intermediates: photolyzed rhodopsin is phosphorylated by rhodopsin kinase (RK) and subsequently capped off by arrestin; GTP-binding transducin alpha subunit deactivates through a process that is stimulated by RGS9.
Class
Organismal Systems; Sensory system
Pathway map
ifu04744  Phototransduction
ifu04744

Other DBs
GO: 0009586
Organism
Ictalurus furcatus (blue catfish) [GN:ifu]
Gene
128621872  green-sensitive opsin-3 [KO:K04250]
128607613  rhodopsin-like [KO:K04250]
128607638  rhodopsin [KO:K04250]
128625012  rhol; rhodopsin, like [KO:K04250]
128601995  grk1a; rhodopsin kinase GRK1 [KO:K00909] [EC:2.7.11.14]
128624126  grk7a; rhodopsin kinase grk7a [KO:K00909] [EC:2.7.11.14]
128617415  rcvrnb; recoverin b [KO:K13764]
128608646  rcvrn2; recoverin 2 [KO:K13764]
128600221  rcvrna; recoverin a [KO:K13764]
128621207  sagb; S-arrestin b [KO:K19627]
128624339  saga; S-arrestin a [KO:K19627]
128607917  gnat2; LOW QUALITY PROTEIN: guanine nucleotide-binding protein G(t) subunit alpha-2 [KO:K04631]
128614998  gnat1; guanine nucleotide-binding protein G(t) subunit alpha-1 [KO:K04631]
128624723  guanine nucleotide-binding protein G(t) subunit alpha-3-like [KO:K04631]
128607644  gnb1a; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 [KO:K04536]
128614530  gnb1b; guanine nucleotide binding protein (G protein), beta polypeptide 1b [KO:K04536]
128600081  gngt1; guanine nucleotide-binding protein G(T) subunit gamma-T1 [KO:K04548]
128617555  regulator of G-protein signaling 9-like [KO:K13765]
128616776  rgs9a; LOW QUALITY PROTEIN: regulator of G-protein signaling 9a [KO:K13765]
128611481  pde6a; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha [KO:K08718] [EC:3.1.4.35]
128622393  pde6b; rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta [KO:K13756] [EC:3.1.4.35]
128617536  pde6gb; phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b [KO:K13759]
128625620  retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma-like [KO:K13759]
128603425  gucy2d; retinal guanylyl cyclase 1 [KO:K12321] [EC:4.6.1.2]
128622077  retinal guanylyl cyclase 2-like [KO:K12322] [EC:4.6.1.2]
128610181  gc2; retinal guanylyl cyclase 2 [KO:K12322] [EC:4.6.1.2]
128621601  gucy2f; retinal guanylyl cyclase 2 [KO:K12322] [EC:4.6.1.2]
128606216  guanylyl cyclase-activating protein 2-like [KO:K08328]
128606217  guca1g; guanylate cyclase activator 1g [KO:K08328]
128622860  guca1d; guanylate cyclase activator 1d [KO:K08328]
128623080  guca1a; guanylyl cyclase-activating protein 1 [KO:K08328]
128619305  guca1b; guanylyl cyclase-activating protein 2 [KO:K08328]
128621151  guca1c; guanylyl cyclase-activating protein 3 [KO:K08328]
128606700  slc24a1; sodium/potassium/calcium exchanger 1 [KO:K13749]
128617159  calm2b; calmodulin 2b, (phosphorylase kinase, delta) [KO:K02183]
128622369  calm3b; calmodulin 3b (phosphorylase kinase, delta) [KO:K02183]
128614966  calglandulin-like [KO:K02183]
128605409  calm2a; calmodulin 2a (phosphorylase kinase, delta) [KO:K02183]
128621174  calm3a; calmodulin 3a (phosphorylase kinase, delta) [KO:K02183]
128601514  calm1b; calmodulin-1b [KO:K02183]
128602734  calml4a; calmodulin-like protein 4a [KO:K02183]
128619325  cnga1b; cyclic nucleotide-gated channel rod photoreceptor subunit alpha [KO:K04948]
128604403  cnga1a; cyclic nucleotide gated channel subunit alpha 1a [KO:K04948]
128611309  cyclic nucleotide-gated cation channel beta-1-like [KO:K04952]
128606515  cngb1a; cyclic nucleotide-gated cation channel beta-1 [KO:K04952]
Compound
C00076  Calcium cation
C00144  GMP
C00238  Potassium cation
C00305  Magnesium cation
C00376  Retinal
C00942  3',5'-Cyclic GMP
C01330  Sodium cation
C02110  11-cis-Retinal
Reference
  Authors
Yau KW, Hardie RC
  Title
Phototransduction motifs and variations.
  Journal
Cell 139:246-64 (2009)
DOI:10.1016/j.cell.2009.09.029
Reference
  Authors
Koch KW, Duda T, Sharma RK
  Title
Photoreceptor specific guanylate cyclases in vertebrate phototransduction.
  Journal
Mol Cell Biochem 230:97-106 (2002)
Reference
PMID:9803480
  Authors
Jindrova H
  Title
Vertebrate phototransduction: activation, recovery, and adaptation.
  Journal
Physiol Res 47:155-68 (1998)
Reference
  Authors
Ebrey T, Koutalos Y
  Title
Vertebrate photoreceptors.
  Journal
Prog Retin Eye Res 20:49-94 (2001)
DOI:10.1016/S1350-9462(00)00014-8
Reference
  Authors
Pepe IM
  Title
Recent advances in our understanding of rhodopsin and phototransduction.
  Journal
Prog Retin Eye Res 20:733-59 (2001)
DOI:10.1016/S1350-9462(01)00013-1
Reference
  Authors
Kramer RH, Molokanova E
  Title
Modulation of cyclic-nucleotide-gated channels and regulation of vertebrate phototransduction.
  Journal
J Exp Biol 204:2921-31 (2001)
Reference
  Authors
Larhammar D, Nordstrom K, Larsson TA
  Title
Evolution of vertebrate rod and cone phototransduction genes.
  Journal
Philos Trans R Soc Lond B Biol Sci 364:2867-80 (2009)
DOI:10.1098/rstb.2009.0077
Reference
  Authors
Dizhoor AM, Olshevskaya EV, Peshenko IV
  Title
Mg2+/Ca2+ cation binding cycle of guanylyl cyclase activating proteins (GCAPs): role in regulation of photoreceptor guanylyl cyclase.
  Journal
Mol Cell Biochem 334:117-24 (2010)
DOI:10.1007/s11010-009-0328-6
Reference
  Authors
Krizaj D, Copenhagen DR
  Title
Calcium regulation in photoreceptors.
  Journal
Front Biosci 7:d2023-44 (2002)
Reference
PMID:9893707
  Authors
Shichida Y, Imai H
  Title
Visual pigment: G-protein-coupled receptor for light signals.
  Journal
Cell Mol Life Sci 54:1299-315 (1998)
DOI:10.1007/s000180050256
Reference
PMID:9419388
  Authors
Pugh EN Jr, Duda T, Sitaramayya A, Sharma RK
  Title
Photoreceptor guanylate cyclases: a review.
  Journal
Biosci Rep 17:429-73 (1997)
DOI:10.1023/A:1027365520442
Reference
  Authors
Luo DG, Xue T, Yau KW
  Title
How vision begins: an odyssey.
  Journal
Proc Natl Acad Sci U S A 105:9855-62 (2008)
DOI:10.1073/pnas.0708405105
Reference
  Authors
Peshenko IV, Dizhoor AM
  Title
Activation and inhibition of photoreceptor guanylyl cyclase by guanylyl cyclase activating protein 1 (GCAP-1): the functional role of Mg2+/Ca2+ exchange in EF-hand domains.
  Journal
J Biol Chem 282:21645-52 (2007)
DOI:10.1074/jbc.M702368200
Reference
  Authors
Ridge KD, Abdulaev NG, Sousa M, Palczewski K
  Title
Phototransduction: crystal clear.
  Journal
Trends Biochem Sci 28:479-87 (2003)
DOI:10.1016/S0968-0004(03)00172-5
Related
pathway
ifu00830  Retinol metabolism
KO pathway
ko04744   
LinkDB

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