KEGG   PATHWAY: ipu00020
Entry
ipu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ictalurus punctatus (channel catfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ipu00020  Citrate cycle (TCA cycle)
ipu00020

Module
ipu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ipu00020]
ipu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ipu00020]
ipu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ipu00020]
ipu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ipu00020]
ipu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ipu00020]
Other DBs
GO: 0006099
Organism
Ictalurus punctatus (channel catfish) [GN:ipu]
Gene
108276119  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
108273769  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
108258521  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
108273913  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
108267742  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
108266818  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
100304677  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
108279145  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
100528472  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
108275983  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
108276129  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X2 [KO:K00030] [EC:1.1.1.41]
108265558  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X2 [KO:K00164] [EC:1.2.4.2]
108277078  ogdhb; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
108263326  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
108270163  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
108275299  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
108260517  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
108273241  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108281045  succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
108272761  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
100528601  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
108280353  succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
108277787  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
108274139  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
108269785  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
108258652  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
100528931  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
108267638  pcxb; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
108278882  pcxa; pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
108263838  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
108260155  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a [KO:K00161] [EC:1.2.4.1]
108256426  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b [KO:K00161] [EC:1.2.4.1]
100528814  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
108279090  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ipu00010  Glycolysis / Gluconeogenesis
ipu00053  Ascorbate and aldarate metabolism
ipu00061  Fatty acid biosynthesis
ipu00062  Fatty acid elongation
ipu00071  Fatty acid degradation
ipu00190  Oxidative phosphorylation
ipu00220  Arginine biosynthesis
ipu00250  Alanine, aspartate and glutamate metabolism
ipu00280  Valine, leucine and isoleucine degradation
ipu00350  Tyrosine metabolism
ipu00470  D-Amino acid metabolism
ipu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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