KEGG   PATHWAY: ise00020
Entry
ise00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ichthyobacterium seriolicida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ise00020  Citrate cycle (TCA cycle)
ise00020

Module
ise_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ise00020]
ise_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ise00020]
ise_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ise00020]
ise_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ise00020]
ise_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ise00020]
Other DBs
GO: 0006099
Organism
Ichthyobacterium seriolicida [GN:ise]
Gene
JBKA6_0933  citrate synthase [KO:K01647] [EC:2.3.3.1]
JBKA6_0428  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JBKA6_1278  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JBKA6_0269  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JBKA6_0268  dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
JBKA6_1410  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
JBKA6_0914  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JBKA6_1190  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JBKA6_1368  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
JBKA6_0376  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
JBKA6_0938  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
JBKA6_1099  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
JBKA6_0430  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
JBKA6_0429  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
JBKA6_0431  succinate dehydrogenase cytochrome b subunit [KO:K00241]
JBKA6_1443  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
JBKA6_0939  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JBKA6_1268  pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
JBKA6_0764  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
JBKA6_0320  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
JBKA6_0312  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
JBKA6_0319  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ise00010  Glycolysis / Gluconeogenesis
ise00061  Fatty acid biosynthesis
ise00071  Fatty acid degradation
ise00190  Oxidative phosphorylation
ise00220  Arginine biosynthesis
ise00250  Alanine, aspartate and glutamate metabolism
ise00280  Valine, leucine and isoleucine degradation
ise00470  D-Amino acid metabolism
ise00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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