KEGG   PATHWAY: jcy00020
Entry
jcy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Jatrophihabitans cynanchi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
jcy00020  Citrate cycle (TCA cycle)
jcy00020

Module
jcy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:jcy00020]
jcy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:jcy00020]
jcy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:jcy00020]
jcy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:jcy00020]
Other DBs
GO: 0006099
Organism
Jatrophihabitans cynanchi [GN:jcy]
Gene
M6B22_00010  citrate synthase [KO:K01647] [EC:2.3.3.1]
M6B22_14455  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
M6B22_00125  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
M6B22_14980  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
M6B22_08295  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M6B22_19290  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
M6B22_19105  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M6B22_09870  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M6B22_17575  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
M6B22_09875  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M6B22_17580  thiamine pyrophosphate-dependent enzyme [KO:K00175] [EC:1.2.7.3 1.2.7.11]
M6B22_17570  2-oxoacid:acceptor oxidoreductase family protein [KO:K00177] [EC:1.2.7.3]
M6B22_17590  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
M6B22_08350  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M6B22_08355  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M6B22_08240  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M6B22_09160  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M6B22_08245  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M6B22_09165  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M6B22_08230  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
M6B22_08235  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
M6B22_16085  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M6B22_08305  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M6B22_12470  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
M6B22_18675  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
M6B22_14950  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M6B22_14955  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
M6B22_14960  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
M6B22_19100  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
M6B22_02595  hypothetical protein [KO:K00169] [EC:1.2.7.1]
M6B22_02590  thiamine pyrophosphate-dependent enzyme [KO:K00170] [EC:1.2.7.1]
M6B22_02600  2-oxoacid:acceptor oxidoreductase family protein [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
jcy00010  Glycolysis / Gluconeogenesis
jcy00053  Ascorbate and aldarate metabolism
jcy00061  Fatty acid biosynthesis
jcy00071  Fatty acid degradation
jcy00190  Oxidative phosphorylation
jcy00220  Arginine biosynthesis
jcy00250  Alanine, aspartate and glutamate metabolism
jcy00280  Valine, leucine and isoleucine degradation
jcy00350  Tyrosine metabolism
jcy00470  D-Amino acid metabolism
jcy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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