KEGG   PATHWAY: kab00020
Entry
kab00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kitasatospora albolonga
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kab00020  Citrate cycle (TCA cycle)
kab00020

Module
kab_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kab00020]
kab_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kab00020]
kab_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kab00020]
kab_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kab00020]
kab_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kab00020]
Other DBs
GO: 0006099
Organism
Kitasatospora albolonga [GN:kab]
Gene
B7C62_31335  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
B7C62_20760  citrate synthase [KO:K01647] [EC:2.3.3.1]
B7C62_10245  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
B7C62_29630  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
B7C62_31305  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
B7C62_25425  2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
B7C62_30035  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B7C62_07665  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B7C62_21655  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
B7C62_21650  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
B7C62_22670  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
B7C62_22665  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
B7C62_33715  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B7C62_22880  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B7C62_33720  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
B7C62_22875  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
B7C62_33710  succinate dehydrogenase [KO:K00241]
B7C62_22890  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
B7C62_22885  succinate dehydrogenase [KO:K00242]
B7C62_23935  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
B7C62_23920  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
B7C62_22725  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
B7C62_23605  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
B7C62_08670  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B7C62_07680  pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
B7C62_07670  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kab00010  Glycolysis / Gluconeogenesis
kab00053  Ascorbate and aldarate metabolism
kab00061  Fatty acid biosynthesis
kab00071  Fatty acid degradation
kab00190  Oxidative phosphorylation
kab00220  Arginine biosynthesis
kab00250  Alanine, aspartate and glutamate metabolism
kab00280  Valine, leucine and isoleucine degradation
kab00350  Tyrosine metabolism
kab00470  D-Amino acid metabolism
kab00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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