KEGG   PATHWAY: kaq00020
Entry
kaq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kaistella sp. 97-N-M2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kaq00020  Citrate cycle (TCA cycle)
kaq00020

Module
kaq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kaq00020]
kaq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kaq00020]
kaq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kaq00020]
kaq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kaq00020]
kaq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kaq00020]
Other DBs
GO: 0006099
Organism
Kaistella sp. 97-N-M2 [GN:kaq]
Gene
L0B70_03605  citrate synthase [KO:K01647] [EC:2.3.3.1]
L0B70_06625  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
L0B70_11525  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L0B70_10110  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
L0B70_00600  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
L0B70_10120  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
L0B70_01085  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L0B70_11840  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L0B70_08135  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L0B70_07235  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L0B70_03520  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L0B70_03510  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L0B70_03525  succinate dehydrogenase cytochrome b subunit [KO:K00241]
L0B70_06150  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L0B70_02765  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L0B70_01375  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
L0B70_04420  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
L0B70_13240  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
L0B70_01900  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
L0B70_13235  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kaq00010  Glycolysis / Gluconeogenesis
kaq00053  Ascorbate and aldarate metabolism
kaq00061  Fatty acid biosynthesis
kaq00071  Fatty acid degradation
kaq00190  Oxidative phosphorylation
kaq00220  Arginine biosynthesis
kaq00250  Alanine, aspartate and glutamate metabolism
kaq00280  Valine, leucine and isoleucine degradation
kaq00350  Tyrosine metabolism
kaq00470  D-Amino acid metabolism
kaq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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