KEGG   PATHWAY: kbb00020
Entry
kbb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Ktedonobacteria bacterium brp13
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kbb00020  Citrate cycle (TCA cycle)
kbb00020

Module
kbb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kbb00020]
kbb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kbb00020]
kbb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kbb00020]
kbb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kbb00020]
kbb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kbb00020]
Other DBs
GO: 0006099
Organism
Ktedonobacteria bacterium brp13 [GN:kbb]
Gene
ccbrp13_50260  citA; citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
ccbrp13_36340  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ccbrp13_53010  leuB_1; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ccbrp13_26180  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
ccbrp13_68410  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ccbrp13_68420  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ccbrp13_38100  acoL; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ccbrp13_64560  pyruvate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ccbrp13_64550  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ccbrp13_65210  succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
ccbrp13_65220  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
ccbrp13_43510  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ccbrp13_43520  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ccbrp13_43490  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
ccbrp13_43500  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
ccbrp13_04210  fumC_1; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ccbrp13_45000  fumC_2; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ccbrp13_40710  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ccbrp13_45740  pckA2_1; phosphoenolpyruvate carboxykinase [ATP] 2 [KO:K01610] [EC:4.1.1.49]
ccbrp13_69180  pckA2_2; phosphoenolpyruvate carboxykinase [ATP] 2 [KO:K01610] [EC:4.1.1.49]
ccbrp13_67260  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
ccbrp13_11210  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ccbrp13_35500  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ccbrp13_11220  2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
ccbrp13_35490  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
ccbrp13_01880  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ccbrp13_11230  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
ccbrp13_35480  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kbb00010  Glycolysis / Gluconeogenesis
kbb00053  Ascorbate and aldarate metabolism
kbb00061  Fatty acid biosynthesis
kbb00071  Fatty acid degradation
kbb00190  Oxidative phosphorylation
kbb00220  Arginine biosynthesis
kbb00250  Alanine, aspartate and glutamate metabolism
kbb00280  Valine, leucine and isoleucine degradation
kbb00350  Tyrosine metabolism
kbb00470  D-Amino acid metabolism
kbb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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