KEGG   PATHWAY: kfa00020
Entry
kfa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kaistella flava (ex Peng et al. 2021)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kfa00020  Citrate cycle (TCA cycle)
kfa00020

Module
kfa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kfa00020]
kfa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kfa00020]
kfa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kfa00020]
kfa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kfa00020]
kfa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kfa00020]
Other DBs
GO: 0006099
Organism
Kaistella flava (ex Peng et al. 2021) [GN:kfa]
Gene
Q73A0000_14415  citrate synthase [KO:K01647] [EC:2.3.3.1]
Q73A0000_04080  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
Q73A0000_13520  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Q73A0000_04460  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q73A0000_06545  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Q73A0000_02440  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
Q73A0000_06535  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
Q73A0000_01710  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q73A0000_04135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q73A0000_09255  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Q73A0000_14180  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Q73A0000_14500  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Q73A0000_14505  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Q73A0000_14495  succinate dehydrogenase cytochrome b subunit [KO:K00241]
Q73A0000_12995  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
Q73A0000_13005  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Q73A0000_15450  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Q73A0000_01240  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
Q73A0000_11090  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Q73A0000_02930  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Q73A0000_00505  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Q73A0000_02935  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kfa00010  Glycolysis / Gluconeogenesis
kfa00053  Ascorbate and aldarate metabolism
kfa00061  Fatty acid biosynthesis
kfa00071  Fatty acid degradation
kfa00190  Oxidative phosphorylation
kfa00220  Arginine biosynthesis
kfa00250  Alanine, aspartate and glutamate metabolism
kfa00280  Valine, leucine and isoleucine degradation
kfa00350  Tyrosine metabolism
kfa00470  D-Amino acid metabolism
kfa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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