KEGG   PATHWAY: kfl00020
Entry
kfl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kribbella flavida
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kfl00020  Citrate cycle (TCA cycle)
kfl00020

Module
kfl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kfl00020]
kfl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kfl00020]
kfl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kfl00020]
kfl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kfl00020]
kfl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kfl00020]
Other DBs
GO: 0006099
Organism
Kribbella flavida [GN:kfl]
Gene
Kfla_6088  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Kfla_5891  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Kfla_4961  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Kfla_4962  DNA binding domain protein, excisionase family [KO:K01647] [EC:2.3.3.1]
Kfla_3756  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Kfla_1537  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Kfla_5184  2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
Kfla_2690  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Kfla_3571  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Kfla_6261  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Kfla_6262  thiamine pyrophosphate protein domain protein TPP-binding protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Kfla_1273  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Kfla_2137  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Kfla_2138  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Kfla_1272  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Kfla_1338  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Kfla_5537  L-aspartate oxidase [KO:K00239] [EC:1.3.5.1]
Kfla_1337  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Kfla_5538  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Kfla_1340  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Kfla_1339  Succinate dehydrogenase hydrophobic anchor subunit-like protein [KO:K00242]
Kfla_5592  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Kfla_5598  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Kfla_1287  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Kfla_0279  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Kfla_2577  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Kfla_2689  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kfl00010  Glycolysis / Gluconeogenesis
kfl00053  Ascorbate and aldarate metabolism
kfl00061  Fatty acid biosynthesis
kfl00071  Fatty acid degradation
kfl00190  Oxidative phosphorylation
kfl00220  Arginine biosynthesis
kfl00250  Alanine, aspartate and glutamate metabolism
kfl00280  Valine, leucine and isoleucine degradation
kfl00350  Tyrosine metabolism
kfl00470  D-Amino acid metabolism
kfl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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