KEGG   PATHWAY: kii00020
Entry
kii00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kocuria indica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kii00020  Citrate cycle (TCA cycle)
kii00020

Module
kii_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kii00020]
kii_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kii00020]
kii_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kii00020]
kii_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kii00020]
kii_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kii00020]
Other DBs
GO: 0006099
Organism
Kocuria indica [GN:kii]
Gene
KocCE7_04160  citrate synthase [KO:K01647] [EC:2.3.3.1]
KocCE7_07435  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KocCE7_04035  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KocCE7_04715  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KocCE7_07565  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KocCE7_09720  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KocCE7_09725  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KocCE7_09600  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KocCE7_03750  sdhA; succinate dehydrogenase (quinone) flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KocCE7_01155  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KocCE7_09605  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KocCE7_03745  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KocCE7_09590  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KocCE7_01160  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KocCE7_03755  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KocCE7_09595  succinate dehydrogenase [KO:K00242]
KocCE7_09380  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KocCE7_04025  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KocCE7_05060  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KocCE7_07910  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KocCE7_01515  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KocCE7_05440  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KocCE7_10630  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KocCE7_07570  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kii00010  Glycolysis / Gluconeogenesis
kii00061  Fatty acid biosynthesis
kii00071  Fatty acid degradation
kii00190  Oxidative phosphorylation
kii00220  Arginine biosynthesis
kii00250  Alanine, aspartate and glutamate metabolism
kii00280  Valine, leucine and isoleucine degradation
kii00350  Tyrosine metabolism
kii00470  D-Amino acid metabolism
kii00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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