KEGG   PATHWAY: kim00020
Entry
kim00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kineobactrum salinum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kim00020  Citrate cycle (TCA cycle)
kim00020

Module
kim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kim00020]
kim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kim00020]
Other DBs
GO: 0006099
Organism
Kineobactrum salinum [GN:kim]
Gene
G3T16_02190  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
G3T16_19705  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
G3T16_00145  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G3T16_02165  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
G3T16_02160  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G3T16_01000  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G3T16_02155  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G3T16_02250  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
G3T16_02245  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
G3T16_02145  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G3T16_02150  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G3T16_02175  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G3T16_14860  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G3T16_15185  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G3T16_02170  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G3T16_02185  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
G3T16_02180  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
G3T16_13890  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
G3T16_04495  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G3T16_07235  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
G3T16_17300  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
G3T16_13690  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
G3T16_09610  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
G3T16_13695  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kim00010  Glycolysis / Gluconeogenesis
kim00053  Ascorbate and aldarate metabolism
kim00061  Fatty acid biosynthesis
kim00071  Fatty acid degradation
kim00190  Oxidative phosphorylation
kim00220  Arginine biosynthesis
kim00250  Alanine, aspartate and glutamate metabolism
kim00280  Valine, leucine and isoleucine degradation
kim00350  Tyrosine metabolism
kim00470  D-Amino acid metabolism
kim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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