KEGG   PATHWAY: ksk00020
Entry
ksk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kitasatospora setae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ksk00020  Citrate cycle (TCA cycle)
ksk00020

Module
ksk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ksk00020]
ksk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ksk00020]
ksk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ksk00020]
ksk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ksk00020]
ksk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ksk00020]
Other DBs
GO: 0006099
Organism
Kitasatospora setae [GN:ksk]
Gene
KSE_54440  citA1; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
KSE_44690  citA2; putative citrate synthase [KO:K01647] [EC:2.3.3.1]
KSE_26430  acnA; putative aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KSE_09990  icd; putative NADP(+)-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KSE_59230  putative 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KSE_49630  putative 2-oxoglutarate dehydrogenase E1 component [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
KSE_22160  lpd1; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSE_61140  lpd2; putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
KSE_45310  putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KSE_45320  putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KSE_30750  sucD; putative succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
KSE_30760  sucC; putative succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
KSE_30410  sdhA1; putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KSE_71980  sdhA2; putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KSE_30420  sdhB1; putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KSE_71990  sdhB2; putative succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KSE_30390  sdhC1; putative succinate dehydrogenase cytochrome b subunit [KO:K00241]
KSE_71970  sdhC2; putative succinate dehydrogenase cytochrome b subunit [KO:K00241]
KSE_30400  sdhD; putative succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
KSE_47800  fum; putative fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
KSE_61850  fumC; putative fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
KSE_30550  mdh; putative malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KSE_47630  pckG; putative GTP-dependent phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
KSE_24830  aceE; putative pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
KSE_22170  sucB; putative dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ksk00010  Glycolysis / Gluconeogenesis
ksk00053  Ascorbate and aldarate metabolism
ksk00061  Fatty acid biosynthesis
ksk00071  Fatty acid degradation
ksk00190  Oxidative phosphorylation
ksk00220  Arginine biosynthesis
ksk00250  Alanine, aspartate and glutamate metabolism
ksk00280  Valine, leucine and isoleucine degradation
ksk00350  Tyrosine metabolism
ksk00470  D-Amino acid metabolism
ksk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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