KEGG   PATHWAY: ksl00630
Entry
ksl00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Kribbella soli
Class
Metabolism; Carbohydrate metabolism
Pathway map
ksl00630  Glyoxylate and dicarboxylate metabolism
ksl00630

Module
ksl_M00621  Glycine cleavage system [PATH:ksl00630]
Other DBs
GO: 0046487 0043648
Organism
Kribbella soli [GN:ksl]
Gene
OG809_14315  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
OG809_31915  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
OG809_15310  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
OG809_18025  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OG809_04835  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
OG809_06060  citrate synthase [KO:K01647] [EC:2.3.3.1]
OG809_36145  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
OG809_40825  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
OG809_40830  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
OG809_04480  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
OG809_29215  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
OG809_19805  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OG809_29635  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OG809_30560  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OG809_40910  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OG809_23420  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
OG809_31335  VOC family protein [KO:K05606] [EC:5.1.99.1]
OG809_40915  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
OG809_41255  protein meaA [KO:K14447] [EC:5.4.99.63]
OG809_18675  ATP-grasp domain-containing protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.4.1.- 6.3.4.14]
OG809_18900  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
OG809_18895  acyl-CoA carboxylase subunit epsilon [KO:K27095]
OG809_25600  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
OG809_18330  methylmalonyl-CoA mutase family protein [KO:K01848] [EC:5.4.99.2]
OG809_08865  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
OG809_20755  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
OG809_34910  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
OG809_34905  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
OG809_18195  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OG809_25875  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
OG809_26160  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
OG809_38930  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
OG809_30290  glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
OG809_28930  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
OG809_26270  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
OG809_26250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OG809_32600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OG809_28900  gcvH; glycine cleavage system protein GcvH [KO:K02437]
OG809_13325  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
OG809_13315  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
OG809_22290  TIM barrel protein [KO:K01816] [EC:5.3.1.22]
OG809_38760  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
OG809_13320  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
OG809_26690  glycerate kinase [KO:K00865] [EC:2.7.1.165]
OG809_13330  glycerate kinase [KO:K00865] [EC:2.7.1.165]
OG809_01210  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
OG809_06435  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
OG809_00650  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
OG809_23295  NAD-dependent formate dehydrogenase [KO:K00122] [EC:1.17.1.9]
OG809_15515  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
OG809_15520  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
OG809_15525  formate dehydrogenase [KO:K00124]
OG809_15530  NAD(P)H-dependent oxidoreductase subunit E [KO:K00127]
OG809_23250  frc; formyl-CoA transferase [KO:K07749] [EC:2.8.3.16]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
ksl00010  Glycolysis / Gluconeogenesis
ksl00020  Citrate cycle (TCA cycle)
ksl00030  Pentose phosphate pathway
ksl00053  Ascorbate and aldarate metabolism
ksl00071  Fatty acid degradation
ksl00230  Purine metabolism
ksl00250  Alanine, aspartate and glutamate metabolism
ksl00260  Glycine, serine and threonine metabolism
ksl00620  Pyruvate metabolism
ksl00710  Carbon fixation by Calvin cycle
ksl00750  Vitamin B6 metabolism
ksl00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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