KEGG   PATHWAY: kyr00020
Entry
kyr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Kyrpidia spormannii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
kyr00020  Citrate cycle (TCA cycle)
kyr00020

Module
kyr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:kyr00020]
kyr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:kyr00020]
kyr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:kyr00020]
kyr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:kyr00020]
kyr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:kyr00020]
Other DBs
GO: 0006099
Organism
Kyrpidia spormannii [GN:kyr]
Gene
CVV65_11825  citrate synthase [KO:K01647] [EC:2.3.3.1]
CVV65_05935  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
CVV65_11970  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
CVV65_12615  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CVV65_12110  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CVV65_12635  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CVV65_09410  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CVV65_09415  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CVV65_03070  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CVV65_03950  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CVV65_03945  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CVV65_08970  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CVV65_08975  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CVV65_03150  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
CVV65_04630  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CVV65_04635  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CVV65_04625  succinate dehydrogenase [KO:K00241]
CVV65_13105  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CVV65_04020  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CVV65_12955  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CVV65_12105  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CVV65_06990  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CVV65_12230  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CVV65_04505  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CVV65_03055  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CVV65_08525  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CVV65_03060  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CVV65_08520  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CVV65_04510  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CVV65_10285  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CVV65_11910  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CVV65_04515  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
CVV65_03065  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
kyr00010  Glycolysis / Gluconeogenesis
kyr00061  Fatty acid biosynthesis
kyr00071  Fatty acid degradation
kyr00190  Oxidative phosphorylation
kyr00220  Arginine biosynthesis
kyr00250  Alanine, aspartate and glutamate metabolism
kyr00280  Valine, leucine and isoleucine degradation
kyr00350  Tyrosine metabolism
kyr00470  D-Amino acid metabolism
kyr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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