KEGG   PATHWAY: labr00010
Entry
labr00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Labrenzia sp. VG12
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
labr00010  Glycolysis / Gluconeogenesis
labr00010

Module
labr_M00001  Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:labr00010]
labr_M00002  Glycolysis, core module involving three-carbon compounds [PATH:labr00010]
labr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:labr00010]
labr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:labr00010]
Other DBs
GO: 0006096 0006094
Organism
Labrenzia sp. VG12 [GN:labr]
Gene
CHH27_24080  glucokinase [KO:K00845] [EC:2.7.1.2]
CHH27_20515  glucokinase [KO:K00845] [EC:2.7.1.2]
CHH27_10585  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
CHH27_05535  1-phosphofructokinase [KO:K16370] [EC:2.7.1.11]
CHH27_10735  fructose-bisphosphatase class I [KO:K03841] [EC:3.1.3.11]
CHH27_04345  glpX; fructose-bisphosphatase class II [KO:K11532] [EC:3.1.3.11 3.1.3.37]
CHH27_13495  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
CHH27_15985  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
CHH27_06370  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
CHH27_07190  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
CHH27_15960  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
CHH27_20590  glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
CHH27_15975  pgk; phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
CHH27_14865  phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
CHH27_21650  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
CHH27_05720  phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
CHH27_16310  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
CHH27_08455  pyruvate, phosphate dikinase [KO:K01006] [EC:2.7.9.1]
CHH27_06245  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CHH27_06240  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CHH27_06235  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CHH27_06230  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHH27_16140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHH27_21955  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHH27_05000  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
CHH27_05005  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
CHH27_04995  2-oxoacid:acceptor oxidoreductase [KO:K00172] [EC:1.2.7.1]
CHH27_22925  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CHH27_22920  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CHH27_04415  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
CHH27_19880  alcohol dehydrogenase [KO:K00001] [EC:1.1.1.1]
CHH27_01560  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CHH27_09460  aldehyde dehydrogenase family protein [KO:K00128] [EC:1.2.1.3]
CHH27_26505  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CHH27_14555  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CHH27_17030  aldehyde dehydrogenase [KO:K00128] [EC:1.2.1.3]
CHH27_25800  aldehyde dehydrogenase [KO:K00138] [EC:1.2.1.-]
CHH27_17385  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
CHH27_17995  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
CHH27_19390  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
CHH27_24180  galactose-1-epimerase [KO:K01785] [EC:5.1.3.3]
CHH27_25600  hydrolase [KO:K20866] [EC:3.1.3.10]
CHH27_24175  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
CHH27_22090  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
labr00020  Citrate cycle (TCA cycle)
labr00030  Pentose phosphate pathway
labr00500  Starch and sucrose metabolism
labr00620  Pyruvate metabolism
labr00640  Propanoate metabolism
labr00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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