KEGG   PATHWAY: labt00030
Entry
labt00030                   Pathway                                
Name
Pentose phosphate pathway - Labrenzia sp. THAF35
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
labt00030  Pentose phosphate pathway
labt00030

Module
labt_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:labt00030]
labt_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:labt00030]
labt_M00061  D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH:labt00030]
Other DBs
GO: 0006098
Organism
Labrenzia sp. THAF35 [GN:labt]
Gene
FIU93_15435  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
FIU93_15470  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
FIU93_10865  gntZ; 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
FIU93_16850  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
FIU93_10430  tktA1; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
FIU93_29510  tktA2; Transketolase 1 [KO:K00615] [EC:2.2.1.1]
FIU93_09310  tal2; putative transaldolase [KO:K00616] [EC:2.2.1.2]
FIU93_03380  tal1; putative transaldolase [KO:K00616] [EC:2.2.1.2]
FIU93_24240  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
FIU93_02300  deoC; Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
FIU93_25265  rbsK3; Ribokinase [KO:K00852] [EC:2.7.1.15]
FIU93_02265  rbsK1; Ribokinase [KO:K00852] [EC:2.7.1.15]
FIU93_31030  rbsK4; Ribokinase [KO:K00852] [EC:2.7.1.15]
FIU93_02290  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
FIU93_02255  algC; Phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
FIU93_07380  phnN; Ribose 1,5-bisphosphate phosphokinase PhnN [KO:K05774] [EC:2.7.4.23]
FIU93_13045  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
FIU93_15465  edd; Phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
FIU93_15460  eda; 2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
FIU93_10310  gdh; Glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
FIU93_29105  gnl; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
FIU93_26275  gntK; Thermoresistant gluconokinase [KO:K00851] [EC:2.7.1.12]
FIU93_12285  kdgK2; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
FIU93_11015  kdgK1; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
FIU93_13950  ttuD3; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
FIU93_11255  ttuD2; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
FIU93_08895  ttuD1; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
FIU93_10395  fda1; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
FIU93_29535  fda2; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
FIU93_29530  fbp2; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
FIU93_22080  glpX; Fructose-1,6-bisphosphatase class 2 [KO:K11532] [EC:3.1.3.11 3.1.3.37]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
labt00010  Glycolysis / Gluconeogenesis
labt00040  Pentose and glucuronate interconversions
labt00052  Galactose metabolism
labt00230  Purine metabolism
labt00240  Pyrimidine metabolism
labt00340  Histidine metabolism
labt00630  Glyoxylate and dicarboxylate metabolism
labt00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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