KEGG   PATHWAY: laci00020
Entry
laci00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Lacinutrix sp. Bg11-31
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
laci00020  Citrate cycle (TCA cycle)
laci00020

Module
laci_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:laci00020]
laci_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:laci00020]
laci_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:laci00020]
laci_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:laci00020]
laci_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:laci00020]
Other DBs
GO: 0006099
Organism
Lacinutrix sp. Bg11-31 [GN:laci]
Gene
CW733_09250  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CW733_07650  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CW733_07655  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CW733_07435  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CW733_11035  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CW733_11025  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CW733_08595  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
CW733_15410  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
CW733_03365  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CW733_05725  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CW733_04065  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CW733_00480  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CW733_11730  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CW733_11725  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CW733_11735  succinate dehydrogenase [KO:K00241]
CW733_03735  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CW733_09120  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CW733_06970  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CW733_00365  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CW733_05990  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
CW733_10975  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CW733_00105  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CW733_14985  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CW733_00110  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
laci00010  Glycolysis / Gluconeogenesis
laci00053  Ascorbate and aldarate metabolism
laci00061  Fatty acid biosynthesis
laci00071  Fatty acid degradation
laci00190  Oxidative phosphorylation
laci00220  Arginine biosynthesis
laci00250  Alanine, aspartate and glutamate metabolism
laci00280  Valine, leucine and isoleucine degradation
laci00350  Tyrosine metabolism
laci00470  D-Amino acid metabolism
laci00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system