KEGG   PATHWAY: lalg00020
Entry
lalg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Lentibacter algarum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lalg00020  Citrate cycle (TCA cycle)
lalg00020

Module
lalg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lalg00020]
lalg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lalg00020]
lalg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lalg00020]
lalg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lalg00020]
lalg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lalg00020]
Other DBs
GO: 0006099
Organism
Lentibacter algarum [GN:lalg]
Gene
LentiSH36_01152  gltA1; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
LentiSH36_00017  gltA2; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
LentiSH36_01267  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LentiSH36_01266  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LentiSH36_01214  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
LentiSH36_00603  sucA; 2-oxoglutarate dehydrogenase E1 component SucA [KO:K00164] [EC:1.2.4.2]
LentiSH36_00602  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
LentiSH36_01413  lpdA2; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
LentiSH36_00600  lpd2; dihydrolipoyl dehydrogenase 2 [KO:K00382] [EC:1.8.1.4]
LentiSH36_00604  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
LentiSH36_00605  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
LentiSH36_00615  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LentiSH36_00617  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LentiSH36_00613  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
LentiSH36_00614  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
LentiSH36_01111  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LentiSH36_00606  mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
LentiSH36_00833  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
LentiSH36_01961  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LentiSH36_01502  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LentiSH36_01503  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LentiSH36_01504  pdhC; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lalg00010  Glycolysis / Gluconeogenesis
lalg00053  Ascorbate and aldarate metabolism
lalg00061  Fatty acid biosynthesis
lalg00071  Fatty acid degradation
lalg00190  Oxidative phosphorylation
lalg00220  Arginine biosynthesis
lalg00250  Alanine, aspartate and glutamate metabolism
lalg00280  Valine, leucine and isoleucine degradation
lalg00350  Tyrosine metabolism
lalg00470  D-Amino acid metabolism
lalg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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