KEGG   PATHWAY: lamb00020
Entry
lamb00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Luteolibacter ambystomatis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lamb00020  Citrate cycle (TCA cycle)
lamb00020

Module
lamb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lamb00020]
lamb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lamb00020]
lamb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lamb00020]
lamb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lamb00020]
Other DBs
GO: 0006099
Organism
Luteolibacter ambystomatis [GN:lamb]
Gene
KBB96_16895  citrate synthase [KO:K01647] [EC:2.3.3.1]
KBB96_01175  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KBB96_02325  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KBB96_06050  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KBB96_06055  sucB; dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KBB96_11915  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
KBB96_17190  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KBB96_14420  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KBB96_14410  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KBB96_06910  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KBB96_06915  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KBB96_06905  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KBB96_00070  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KBB96_11290  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KBB96_01285  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KBB96_03795  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KBB96_09675  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KBB96_01790  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KBB96_17500  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KBB96_16570  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KBB96_16575  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KBB96_16585  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lamb00010  Glycolysis / Gluconeogenesis
lamb00053  Ascorbate and aldarate metabolism
lamb00061  Fatty acid biosynthesis
lamb00071  Fatty acid degradation
lamb00190  Oxidative phosphorylation
lamb00220  Arginine biosynthesis
lamb00250  Alanine, aspartate and glutamate metabolism
lamb00280  Valine, leucine and isoleucine degradation
lamb00350  Tyrosine metabolism
lamb00470  D-Amino acid metabolism
lamb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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