KEGG   PATHWAY: lbf00020
Entry
lbf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira biflexa serovar Patoc Patoc 1 (Ames)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lbf00020  Citrate cycle (TCA cycle)
lbf00020

Module
lbf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lbf00020]
lbf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lbf00020]
lbf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lbf00020]
lbf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lbf00020]
Other DBs
GO: 0006099
Organism
Leptospira biflexa serovar Patoc Patoc 1 (Ames) [GN:lbf]
Gene
LBF_1009  gltA-1; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LBF_2610  gltA-2; Citrate synthase [KO:K01647] [EC:2.3.3.1]
LBF_4237  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LBF_2792  icdA; Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LBF_1022  sucA; Oxoglutarate dehydrogenase (lipoamide), dehydrogenase (E1) component [KO:K00164] [EC:1.2.4.2]
LBF_1024  aceF; Bifunctional dihydrolipoyllysine-residue acetyltransferase/dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LBF_2820  lpdA-2; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LBF_1023  lpdA-1; Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LBF_2004  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
LBF_2003  sucC; Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
LBF_1646  sdhA; Succinate dehydrogenase/fumarate reductase subunit A [KO:K00239] [EC:1.3.5.1]
LBF_3026  sdhA-1; Succinate dehydrogenase/fumarate reductase subunit A [KO:K00239] [EC:1.3.5.1]
LBF_1647  sdhB; Succinate dehydrogenase/fumarate reductase subunit B [KO:K00240] [EC:1.3.5.1]
LBF_1645  Conserved hypothetical protein [KO:K00241]
LBF_3027  fumAB; Fumarate hydratase, alpha and beta subunits [KO:K01676] [EC:4.2.1.2]
LBF_3021  fumC; Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LBF_1102  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LBF_1037  mqo; Malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
LBF_2886  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LBF_1506  acoB; Pyruvate dehydrogenase (lipoamide), beta subunit [KO:K00162] [EC:1.2.4.1]
LBF_1505  acoC; Bifunctional dihydrolipoyllysine-residue acetyltransferase/dihydrolipoyllysine-residue succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lbf00010  Glycolysis / Gluconeogenesis
lbf00053  Ascorbate and aldarate metabolism
lbf00061  Fatty acid biosynthesis
lbf00071  Fatty acid degradation
lbf00190  Oxidative phosphorylation
lbf00220  Arginine biosynthesis
lbf00250  Alanine, aspartate and glutamate metabolism
lbf00280  Valine, leucine and isoleucine degradation
lbf00350  Tyrosine metabolism
lbf00470  D-Amino acid metabolism
lbf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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