KEGG   PATHWAY: lcap00020
Entry
lcap00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Lysinibacillus capsici
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcap00020  Citrate cycle (TCA cycle)
lcap00020

Module
lcap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lcap00020]
lcap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lcap00020]
lcap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lcap00020]
lcap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lcap00020]
lcap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lcap00020]
Other DBs
GO: 0006099
Organism
Lysinibacillus capsici [GN:lcap]
Gene
ICJ70_07055  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
ICJ70_11650  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
ICJ70_07060  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ICJ70_12840  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ICJ70_12835  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
ICJ70_09605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_13910  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_20130  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_20545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ICJ70_18795  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ICJ70_18790  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ICJ70_19320  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ICJ70_19325  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ICJ70_22555  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
ICJ70_03050  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
ICJ70_07390  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ICJ70_07395  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ICJ70_07385  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
ICJ70_04210  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ICJ70_15320  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ICJ70_15380  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ICJ70_16695  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ICJ70_07065  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ICJ70_00750  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ICJ70_20005  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ICJ70_06520  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ICJ70_20145  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ICJ70_20140  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
ICJ70_20135  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lcap00010  Glycolysis / Gluconeogenesis
lcap00053  Ascorbate and aldarate metabolism
lcap00061  Fatty acid biosynthesis
lcap00062  Fatty acid elongation
lcap00071  Fatty acid degradation
lcap00190  Oxidative phosphorylation
lcap00220  Arginine biosynthesis
lcap00250  Alanine, aspartate and glutamate metabolism
lcap00280  Valine, leucine and isoleucine degradation
lcap00350  Tyrosine metabolism
lcap00470  D-Amino acid metabolism
lcap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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