KEGG   PATHWAY: lcb00030
Entry
lcb00030                    Pathway                                
Name
Pentose phosphate pathway - Lacticaseibacillus paracasei BL23
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcb00030  Pentose phosphate pathway
lcb00030

Module
lcb_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lcb00030]
lcb_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lcb00030]
lcb_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:lcb00030]
lcb_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:lcb00030]
Other DBs
GO: 0006098
Organism
Lacticaseibacillus paracasei BL23 [GN:lcb]
Gene
LCABL_12870  pgi; Glucose-6-phosphate isomerase (GPI) (Phosphoglucose isomerase) (PGI) (Phosphohexose isomerase) (PHI) [KO:K01810] [EC:5.3.1.9]
LCABL_08400  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
LCABL_10210  ywcC; Uncharacterized protein ywcC [KO:K07404] [EC:3.1.1.31]
LCABL_02270  gntZ; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
LCABL_18990  gndA; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
LCABL_18350  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
LCABL_29200  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
LCABL_24940  rpiA; Ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
LCABL_28660  rpiA; Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI) [KO:K01807] [EC:5.3.1.6]
LCABL_29160  rpiA; Ribose-5-phosphate isomerase A (Phosphoriboisomerase A) (PRI) [KO:K01807] [EC:5.3.1.6]
LCABL_04490  hps; Putative 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
LCABL_04190  Putative hexulose 6 phosphate synthase [KO:K08093] [EC:4.1.2.43]
LCABL_04500  phi; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
LCABL_04200  phi; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
LCABL_01680  xpk; Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
LCABL_29270  xpk; Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
LCABL_02740  deoC; Deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) [KO:K01619] [EC:4.1.2.4]
LCABL_00070  deoC; Deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) [KO:K01619] [EC:4.1.2.4]
LCABL_06340  deoC; Deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA) [KO:K01619] [EC:4.1.2.4]
LCABL_03260  rbsK; Ribokinase [KO:K00852] [EC:2.7.1.15]
LCABL_02750  deoB; Phosphopentomutase (Phosphodeoxyribomutase) [KO:K01839] [EC:5.4.2.7]
LCABL_25260  deoB; Phosphopentomutase (Phosphodeoxyribomutase) [KO:K01839] [EC:5.4.2.7]
LCABL_10630  pgm; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
LCABL_31000  prsA; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
LCABL_27500  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
LCABL_00520  eda-1; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LCABL_28630  eda-1; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LCABL_23550  gdh; Glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
LCABL_02280  gntK; Gluconokinase [KO:K25031] [EC:2.7.1.12]
LCABL_28640  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
LCABL_04120  ptnA; Mannose-specific PTS system, component IIA [KO:K17464] [EC:2.7.1.203]
LCABL_04130  ptfB; Putative phosphotransferase system enzyme IIB [KO:K17465] [EC:2.7.1.203]
LCABL_03870  sipB; SipB [KO:K17465] [EC:2.7.1.203]
LCABL_04140  ptpC; Putative phosphotransferase system enzyme IIC [KO:K17466]
LCABL_04150  ptpD; EIID PTS component [KO:K17467]
LCABL_03930  Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
LCABL_04060  Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
LCABL_03500  Fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
LCABL_05010  fba; Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
LCABL_04290  sorG; Fructose-bisphosphate aldolase (Fragment) [KO:K01624] [EC:4.1.2.13]
LCABL_22100  fbp; Fructose-1,6-bisphosphatase [KO:K04041] [EC:3.1.3.11]
LCABL_15840  pfkA; 6-phosphofructokinase (Phosphofructokinase) (Phosphohexokinase) [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
lcb00010  Glycolysis / Gluconeogenesis
lcb00040  Pentose and glucuronate interconversions
lcb00052  Galactose metabolism
lcb00230  Purine metabolism
lcb00240  Pyrimidine metabolism
lcb00340  Histidine metabolism
lcb00630  Glyoxylate and dicarboxylate metabolism
lcb00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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