KEGG   PATHWAY: lce00030
Entry
lce00030                    Pathway                                
Name
Pentose phosphate pathway - Lacticaseibacillus paracasei LC2W
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lce00030  Pentose phosphate pathway
lce00030

Module
lce_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lce00030]
lce_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lce00030]
lce_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:lce00030]
lce_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:lce00030]
Other DBs
GO: 0006098
Organism
Lacticaseibacillus paracasei LC2W [GN:lce]
Gene
LC2W_1291  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
LC2W_0853  Glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
LC2W_1007  6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
LC2W_1855  gnd; 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
LC2W_0218  Fusion protein(Transaldolase and 6-phosphogluconate dehydrogenase) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
LC2W_1793  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
LC2W_2922  Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
LC2W_2866  Ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
LC2W_2478  Ribose-5-phosphate isomerase, putative [KO:K01807] [EC:5.3.1.6]
LC2W_2919  Ribose 5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
LC2W_0417  Putative hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
LC2W_0448  Hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
LC2W_0418  Hexulose-6-phosphate synthase (D-arabino 3-hexulose 6-phosphate formaldehyde lyase) [KO:K08094] [EC:5.3.1.27]
LC2W_0449  Hexulose-6-phosphate synthase (D-arabino 3-hexulose 6-phosphate formaldehyde lyase) [KO:K08094] [EC:5.3.1.27]
LC2W_2929  Phosphoketolase 1 [KO:K01621] [EC:4.1.2.9 4.1.2.22]
LC2W_0159  Phosphoketolase 1 [KO:K01621] [EC:4.1.2.9 4.1.2.22]
LC2W_0009  Ribokinase [KO:K01619] [EC:4.1.2.4]
LC2W_0261  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
LC2W_0639  Deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
LC2W_0320  Ribokinase [KO:K00852] [EC:2.7.1.15]
LC2W_2511  Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
LC2W_0262  deoB; Phosphopentomutase [KO:K01839] [EC:5.4.2.7]
LC2W_1049  Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
LC2W_2737  prsA; hypothetical protein [KO:K00948] [EC:2.7.6.1]
LC2W_3101  hypothetical protein [KO:K00948] [EC:2.7.6.1]
LC2W_2863  eda; hypothetical protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
LC2W_2328  yohF; Glucose 1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
LC2W_0219  gntK; Gluconokinase [KO:K25031] [EC:2.7.1.12]
LC2W_2864  KHG/KDPG family aldolase/carbohydrate kinase, PfkB family [KO:K00874] [EC:2.7.1.45]
LC2W_0410  Putative PTS system mannose-specific EIIAB component [KO:K17464] [EC:2.7.1.203]
LC2W_0411  PTS system mannose-specific EIIAB component [KO:K17465] [EC:2.7.1.203]
LC2W_2925  Putative PTS system mannose-specific EIIAB component [KO:K17465] [EC:2.7.1.203]
LC2W_0385  Putative PTS system mannose-specific EIIAB component [KO:K17465] [EC:2.7.1.203]
LC2W_0412  sorA; Mannose-specific pts system component iicd [KO:K17466]
LC2W_0413  PTS system, mannose-specific IICD component [KO:K17467]
LC2W_2941  manZ; PTS system, mannose-specific IICD component [KO:K17467]
LC2W_0391  fba; Fba [KO:K01624] [EC:4.1.2.13]
LC2W_0404  fba; Fba [KO:K01624] [EC:4.1.2.13]
LC2W_0501  Fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
LC2W_0345  hypothetical protein [KO:K01624] [EC:4.1.2.13]
LC2W_0428  fba; Fba [KO:K01624] [EC:4.1.2.13]
LC2W_2948  gatY; Fructose-1,6-bisphosphate aldolase, class II [KO:K01624] [EC:4.1.2.13]
LC2W_2953  gatY; hypothetical protein [KO:K01624] [EC:4.1.2.13]
LC2W_2165  Fructose-1-6-bisphosphatase [KO:K04041] [EC:3.1.3.11]
LC2W_1528  pfkA; 6-phosphofructokinase isozyme 1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
lce00010  Glycolysis / Gluconeogenesis
lce00040  Pentose and glucuronate interconversions
lce00052  Galactose metabolism
lce00230  Purine metabolism
lce00240  Pyrimidine metabolism
lce00340  Histidine metabolism
lce00630  Glyoxylate and dicarboxylate metabolism
lce00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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