KEGG   PATHWAY: lck00020
Entry
lck00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lichenicola cladoniae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lck00020  Citrate cycle (TCA cycle)
lck00020

Module
lck_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lck00020]
lck_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lck00020]
lck_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lck00020]
lck_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lck00020]
lck_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lck00020]
Other DBs
GO: 0006099
Organism
Lichenicola cladoniae [GN:lck]
Gene
HN018_12910  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HN018_02305  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HN018_16870  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HN018_07070  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
HN018_22955  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
HN018_02660  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HN018_02665  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HN018_02670  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HN018_09770  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HN018_16460  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HN018_16455  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HN018_02600  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HN018_02595  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HN018_02610  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HN018_02605  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HN018_15975  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HN018_16945  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HN018_02655  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HN018_04130  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HN018_23005  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
HN018_09755  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HN018_09760  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
HN018_09765  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lck00010  Glycolysis / Gluconeogenesis
lck00053  Ascorbate and aldarate metabolism
lck00061  Fatty acid biosynthesis
lck00071  Fatty acid degradation
lck00190  Oxidative phosphorylation
lck00220  Arginine biosynthesis
lck00250  Alanine, aspartate and glutamate metabolism
lck00280  Valine, leucine and isoleucine degradation
lck00350  Tyrosine metabolism
lck00470  D-Amino acid metabolism
lck00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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