KEGG   PATHWAY: lcre00030
Entry
lcre00030                   Pathway                                
Name
Pentose phosphate pathway - Lignipirellula cremea
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lcre00030  Pentose phosphate pathway
lcre00030

Module
lcre_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:lcre00030]
lcre_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:lcre00030]
lcre_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:lcre00030]
lcre_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:lcre00030]
Other DBs
GO: 0006098
Organism
Lignipirellula cremea [GN:lcre]
Gene
Pla8534_38790  pgi; Glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
Pla8534_41880  zwf; Glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
Pla8534_20880  pgl_2; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
Pla8534_16520  pgl_1; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Pla8534_28610  pgl_3; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Pla8534_31870  pgl_4; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Pla8534_43760  pgl_5; 6-phosphogluconolactonase [KO:K07404] [EC:3.1.1.31]
Pla8534_38690  gndA; 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
Pla8534_41570  rpe; Ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
Pla8534_05140  tkt; Transketolase [KO:K00615] [EC:2.2.1.1]
Pla8534_69510  dxs_2; 1-deoxy-D-xylulose-5-phosphate synthase [KO:K00615] [EC:2.2.1.1]
Pla8534_69520  fas2; Ferredoxin fas2 [KO:K00615] [EC:2.2.1.1]
Pla8534_21480  tal; Transaldolase [KO:K00616] [EC:2.2.1.2]
Pla8534_20070  rpiA; Ribose-5-phosphate isomerase A [KO:K01807] [EC:5.3.1.6]
Pla8534_68500  xpkA; Xylulose-5-phosphate phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
Pla8534_71110  deoC2; Deoxyribose-phosphate aldolase 2 [KO:K01619] [EC:4.1.2.4]
Pla8534_17890  pgcA; Phosphoglucomutase [KO:K01835] [EC:5.4.2.2]
Pla8534_41460  prs; Ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
Pla8534_35440  kdgA; KHG/KDPG aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
Pla8534_02520  gdhI_1; Glucose 1-dehydrogenase 1 [KO:K00034] [EC:1.1.1.47]
Pla8534_12880  ycdF_2; Glucose 1-dehydrogenase 2 [KO:K00034] [EC:1.1.1.47]
Pla8534_34130  fabG_6; 3-oxoacyl-[acyl-carrier-protein] reductase FabG [KO:K00034] [EC:1.1.1.47]
Pla8534_25860  yjjN_1; Putative L-galactonate oxidoreductase [KO:K22969] [EC:1.1.1.47]
Pla8534_53120  yjmD; putative zinc-type alcohol dehydrogenase-like protein YjmD [KO:K22969] [EC:1.1.1.47]
Pla8534_04170  Cytochrome c [KO:K00117] [EC:1.1.5.2]
Pla8534_24970  gdhB; Quinoprotein glucose dehydrogenase B precursor [KO:K00117] [EC:1.1.5.2]
Pla8534_31940  Cytochrome c [KO:K00117] [EC:1.1.5.2]
Pla8534_02670  gnl_1; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_06920  gnl_2; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_14600  gnl_3; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_23690  gnl_4; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_32310  gnl_6; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_32770  gnl_7; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_39500  gnl_8; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_41520  gnl_9; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_56580  gnl_11; Gluconolactonase precursor [KO:K01053] [EC:3.1.1.17]
Pla8534_37560  kdgK; 2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
Pla8534_60850  ttuD; Putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Pla8534_68480  fructose-1,6-bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
Pla8534_59820  fbaA; Fructose-bisphosphate aldolase class 2 [KO:K01624] [EC:4.1.2.13]
Pla8534_52860  fbp; Fructose-1,6-bisphosphatase class 1 [KO:K03841] [EC:3.1.3.11]
Pla8534_67940  pfkA_3; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Pla8534_28360  pfkA1_2; 6-phosphofructokinase 1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Pla8534_09290  pfkA_1; 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Pla8534_11360  pfkA1_1; 6-phosphofructokinase 1 [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Pla8534_11970  pfkA_2; 6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Pla8534_25780  pfp; Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
lcre00010  Glycolysis / Gluconeogenesis
lcre00040  Pentose and glucuronate interconversions
lcre00052  Galactose metabolism
lcre00230  Purine metabolism
lcre00240  Pyrimidine metabolism
lcre00340  Histidine metabolism
lcre00630  Glyoxylate and dicarboxylate metabolism
lcre00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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